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| Mutant Information |
|---|
| Mutant Name | FN868-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN868-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19205191 | T-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 37046323 | G-T | HET | INTRON | |
| SBS | Chr1 | 37957169 | T-C | HET | INTRON | |
| SBS | Chr1 | 41131838 | G-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 5359444 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 14005809 | G-A | HET | INTRON | |
| SBS | Chr10 | 5546122 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 10417832 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 11953912 | T-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 25335968 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 25663870 | T-G | HET | INTERGENIC | |
| SBS | Chr11 | 25663871 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 16383877 | G-A | HOMO | INTRON | |
| SBS | Chr12 | 9814020 | A-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 11514668 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 9081815 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 10668997 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 1594570 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 20363197 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 30412076 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g51350 |
| SBS | Chr4 | 30412077 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g51350 |
| SBS | Chr4 | 32523044 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 34890346 | C-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 30546295 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 26814982 | G-C | HET | INTERGENIC | |
| SBS | Chr7 | 27681649 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 27758147 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 3112623 | A-G | HET | INTRON | |
| SBS | Chr7 | 7385955 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 3353335 | G-A | HOMO | INTERGENIC |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 6705495 | 6705504 | 9 | |
| Deletion | Chr5 | 10256306 | 10256316 | 10 | LOC_Os05g17830 |
| Deletion | Chr3 | 13475318 | 13475321 | 3 | |
| Deletion | Chr9 | 18030920 | 18030927 | 7 | |
| Deletion | Chr12 | 19995272 | 19995273 | 1 | |
| Deletion | Chr7 | 20800290 | 20800299 | 9 | |
| Deletion | Chr5 | 20927588 | 20927595 | 7 | |
| Deletion | Chr2 | 24800992 | 24801002 | 10 | |
| Deletion | Chr5 | 25229242 | 25229251 | 9 | |
| Deletion | Chr11 | 27094032 | 27094033 | 1 | |
| Deletion | Chr1 | 28951330 | 28951338 | 8 | |
| Deletion | Chr4 | 29002265 | 29002276 | 11 | |
| Deletion | Chr1 | 32469976 | 32469977 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 41354715 | 41354715 | 1 | |
| Insertion | Chr11 | 871553 | 871554 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 24191567 | 26395295 | LOC_Os06g40570 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2978076 | Chr7 | 20101826 | |
| Translocation | Chr9 | 21176542 | Chr1 | 28240038 | |
| Translocation | Chr11 | 22758805 | Chr7 | 399392 | |
| Translocation | Chr6 | 23040858 | Chr1 | 33082180 | 2 |