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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14857471	G-T	HET	INTRON
SBS	Chr2	11995177	A-G	HET	INTERGENIC
SBS	Chr2	29322607	C-G	HET	UTR_5_PRIME
SBS	Chr2	32764606	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr3	9769174	G-A	HOMO	INTERGENIC
SBS	Chr4	16272447	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g27520
SBS	Chr4	28420891	G-A	HET	INTERGENIC
SBS	Chr5	492633	T-A	HOMO	INTRON
SBS	Chr6	28965220	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g47860
SBS	Chr7	15594742	G-A	HET	INTERGENIC
SBS	Chr8	624451	T-C	HET	INTERGENIC
SBS	Chr8	23535033	A-G	HOMO	INTERGENIC
SBS	Chr9	5495450	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10080
SBS	Chr9	14756658	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	21085540	T-A	HET	INTRON
SBS	Chr9	21085541	T-A	HET	INTRON
SBS	Chr9	21835922	T-C	HET	INTERGENIC
SBS	Chr10	7581946	G-C	HET	INTRON
SBS	Chr10	9394775	A-T	HET	INTRON
SBS	Chr11	1026730	C-G	HET	INTERGENIC
SBS	Chr11	2669183	A-G	HET	INTERGENIC
SBS	Chr11	9986303	T-A	HOMO	INTERGENIC
SBS	Chr11	11477660	G-A	HOMO	INTERGENIC
SBS	Chr12	4470659	G-A	HET	INTRON
SBS	Chr12	7845866	C-T	HOMO	INTERGENIC
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr12	14553236	A-T	HET	INTERGENIC
SBS	Chr12	14607548	C-G	HET	INTERGENIC
SBS	Chr12	19998365	A-C	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	475210	475224	14
Deletion	Chr3	490195	490197	2
Deletion	Chr12	678304	678305	1
Deletion	Chr4	976284	976291	7	LOC_Os04g02600
Deletion	Chr9	1327794	1327798	4
Deletion	Chr7	2551977	2551978	1
Deletion	Chr10	5362618	5362636	18	LOC_Os10g09900
Deletion	Chr7	5583661	5583662	1	LOC_Os07g10400
Deletion	Chr6	5953015	5953016	1
Deletion	Chr9	7184593	7184757	164
Deletion	Chr2	7785195	7785196	1	LOC_Os02g14210
Deletion	Chr12	8186812	8186815	3
Deletion	Chr4	8825236	8825247	11	LOC_Os04g16250
Deletion	Chr7	11962666	11962667	1
Deletion	Chr5	12655694	12655700	6	LOC_Os05g22350
Deletion	Chr1	14406001	14578000	172000	25
Deletion	Chr9	18937022	18937027	5
Deletion	Chr12	19599726	19599734	8
Deletion	Chr1	19731650	19731659	9
Deletion	Chr3	20129813	20129822	9
Deletion	Chr3	20228416	20228433	17
Deletion	Chr7	22937001	23774000	837000	141
Deletion	Chr8	23095629	23095631	2
Deletion	Chr7	23780001	23825000	45000	9
Deletion	Chr11	24265785	24272865	7080
Deletion	Chr12	24795616	24795618	2
Deletion	Chr5	25221074	25221075	1	LOC_Os05g43374
Deletion	Chr2	26527596	26527599	3
Deletion	Chr2	27590478	27590487	9
Deletion	Chr1	28792625	28792626	1
Deletion	Chr2	30303782	30303783	1
Deletion	Chr4	31425400	31425408	8
Deletion	Chr1	33060457	33060461	4
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	6325966	6325971	6
Insertion	Chr3	6642905	6642906	2
Insertion	Chr12	3244226	3244226	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	677329	13216791

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4500638	Chr7	23830646	LOC_Os12g08760
Translocation	Chr12	4500641	Chr7	23825657	LOC_Os12g08760
Translocation	Chr8	14295491	Chr1	2949201	LOC_Os08g23620
Translocation	Chr7	16018543	Chr2	30265488	LOC_Os07g27480
Translocation	Chr7	16020065	Chr2	30265484	LOC_Os07g27480
Translocation	Chr11	28280603	Chr3	7009450

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