Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20042891	G-A	HOMO	INTRON
SBS	Chr1	40571906	G-A	HOMO	INTERGENIC
SBS	Chr10	12213495	G-A	HET	INTERGENIC
SBS	Chr10	18046308	G-A	HET	INTERGENIC
SBS	Chr10	3376185	G-T	HET	INTERGENIC
SBS	Chr10	6982456	A-G	HET	INTRON
SBS	Chr11	16695080	G-A	HET	INTERGENIC
SBS	Chr12	9957165	G-A	HOMO	INTERGENIC
SBS	Chr2	29499273	G-A	HOMO	INTERGENIC
SBS	Chr2	31888459	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	13502297	G-A	HET	INTERGENIC
SBS	Chr3	36316528	G-T	HET	INTERGENIC
SBS	Chr3	7543148	G-T	HET	SYNONYMOUS_CODING
SBS	Chr3	8533192	A-T	HET	INTERGENIC
SBS	Chr4	2141411	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04490
SBS	Chr4	22072944	G-A	HOMO	INTERGENIC
SBS	Chr4	279175	G-A	HOMO	INTRON
SBS	Chr4	7238808	G-A	HET	INTERGENIC
SBS	Chr5	25522724	T-C	HET	INTERGENIC
SBS	Chr6	30171705	T-A	HOMO	INTERGENIC
SBS	Chr6	7264760	G-A	HET	INTERGENIC
SBS	Chr7	17505771	T-C	HOMO	INTRON
SBS	Chr8	13478506	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22354
SBS	Chr8	17636933	T-C	HET	INTRON
SBS	Chr8	17636934	G-T	HET	INTRON
SBS	Chr9	18245191	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29980
SBS	Chr9	22181319	A-T	HET	INTERGENIC
SBS	Chr9	22181345	C-T	HET	INTERGENIC
SBS	Chr9	4772039	G-C	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1090456	1090470	14
Deletion	Chr4	2437623	2437625	2
Deletion	Chr6	2797294	2797494	200
Deletion	Chr9	3110940	3110941	1
Deletion	Chr6	4870364	4870365	1
Deletion	Chr7	11186420	11186421	1
Deletion	Chr8	12626407	12626409	2
Deletion	Chr12	14990653	14990654	1
Deletion	Chr1	15235234	15236721	1487
Deletion	Chr4	18526852	18526856	4
Deletion	Chr4	19151817	19151827	10	LOC_Os04g31971
Deletion	Chr3	19957554	19957560	6	LOC_Os03g35980
Deletion	Chr3	19958383	19958388	5
Deletion	Chr2	20265796	20265800	4
Deletion	Chr6	21032543	21032548	5
Deletion	Chr6	21236100	21236108	8
Deletion	Chr9	21411994	21411996	2
Deletion	Chr11	23422156	23422158	2	LOC_Os11g39350
Deletion	Chr3	24642819	24642820	1
Deletion	Chr11	25524957	25524958	1
Deletion	Chr7	29357126	29357128	2	LOC_Os07g49030
Deletion	Chr6	30171670	30171697	27

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	6160503	6160506	4
Insertion	Chr10	21194276	21194277	2
Insertion	Chr10	9179110	9179111	2
Insertion	Chr11	27442193	27442194	2	LOC_Os11g45370
Insertion	Chr3	23833340	23833342	3
Insertion	Chr6	14168614	14168617	4
Insertion	Chr6	20677302	20677303	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9878191	11036156	LOC_Os10g21560
Inversion	Chr10	9878209	11036151	LOC_Os10g21560
Inversion	Chr2	12915991	13112486	2
Inversion	Chr1	40001694	40651266

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3735919	Chr1	15236714	LOC_Os10g07100
Translocation	Chr10	3735927	Chr1	15235241	LOC_Os10g07100
Translocation	Chr6	14118776	Chr2	17594059
Translocation	Chr9	15062122	Chr4	29266147
Translocation	Chr9	21245871	Chr2	18115100

Main menu