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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5116356	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g09860
SBS	Chr1	14107367	C-A	HET	INTRON
SBS	Chr1	33779982	G-T	HET	INTERGENIC
SBS	Chr1	34915401	G-C	HET	INTERGENIC
SBS	Chr2	3939170	G-T	HET	INTERGENIC
SBS	Chr2	9137857	A-C	HET	SYNONYMOUS_CODING
SBS	Chr2	13040621	G-C	HOMO	INTERGENIC
SBS	Chr2	18286287	A-C	HOMO	INTRON
SBS	Chr2	27088884	G-A	HOMO	INTERGENIC
SBS	Chr4	4763151	C-G	HOMO	INTERGENIC
SBS	Chr4	18395644	C-T	HOMO	INTERGENIC
SBS	Chr4	20833081	G-A	HET	INTERGENIC
SBS	Chr5	6748531	T-A	HET	INTERGENIC
SBS	Chr5	24236838	C-T	HET	INTERGENIC
SBS	Chr5	24895248	T-C	HOMO	INTERGENIC
SBS	Chr6	26238325	A-G	HET	INTERGENIC
SBS	Chr7	8555136	T-C	HET	INTERGENIC
SBS	Chr7	22508182	C-T	HET	INTRON
SBS	Chr7	28218292	A-G	HET	INTRON
SBS	Chr7	28360621	A-T	HET	INTERGENIC
SBS	Chr7	29597806	A-G	HET	INTERGENIC
SBS	Chr9	10063892	T-C	HET	INTERGENIC
SBS	Chr9	18233338	G-A	HOMO	INTERGENIC
SBS	Chr10	79949	A-T	HET	INTERGENIC
SBS	Chr10	2498218	G-A	HET	INTERGENIC
SBS	Chr10	12427593	A-G	HOMO	INTERGENIC
SBS	Chr10	17831995	A-T	HOMO	INTERGENIC
SBS	Chr10	17831996	G-T	HOMO	INTERGENIC
SBS	Chr11	3961231	C-T	HET	INTRON
SBS	Chr11	14730439	A-C	HET	INTERGENIC
SBS	Chr11	24340222	A-G	HOMO	INTERGENIC
SBS	Chr12	16335674	A-C	HET	SYNONYMOUS_CODING
SBS	Chr12	17896933	G-A	HET	INTERGENIC
SBS	Chr12	17896934	T-G	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	673218	673226	8	LOC_Os07g02120
Deletion	Chr10	1669494	1669503	9
Deletion	Chr7	2373958	2373962	4
Deletion	Chr1	2866708	2869048	2340	LOC_Os01g06000
Deletion	Chr4	5088822	5088823	1
Deletion	Chr12	5200540	5200544	4
Deletion	Chr12	6886466	6908919	22453	4
Deletion	Chr6	7028795	7028797	2
Deletion	Chr11	7116831	7116833	2	LOC_Os11g12640
Deletion	Chr2	9138023	9138034	11	LOC_Os02g16060
Deletion	Chr1	14244150	14244154	4
Deletion	Chr11	15586461	15605865	19404	5
Deletion	Chr8	16148752	16148755	3
Deletion	Chr8	16216391	16216392	1
Deletion	Chr11	16988498	16988499	1
Deletion	Chr4	18151620	18151623	3
Deletion	Chr4	21602413	21602414	1
Deletion	Chr8	26890058	26890066	8
Deletion	Chr6	29970920	29970924	4
Deletion	Chr1	30494413	30494420	7
Deletion	Chr3	33048731	33048738	7
Deletion	Chr1	43162157	43162167	10

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	29582753	29582753	1
Insertion	Chr10	18969272	18969272	1
Insertion	Chr2	18298484	18298489	6
Insertion	Chr6	23538526	23538528	3
Insertion	Chr5	26347090	26347090	1	LOC_Os05g45420

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6018589	7289273
Inversion	Chr6	29575490	29582795

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3247748	Chr1	10486188
Translocation	Chr8	4691224	Chr7	3156838	2
Translocation	Chr9	10079274	Chr8	21093030	LOC_Os09g16458
Translocation	Chr9	10095726	Chr8	21092892

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