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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23323550	T-C	HET	INTERGENIC
SBS	Chr1	24389029	T-A	HOMO	INTERGENIC
SBS	Chr1	26808711	C-A	HOMO	INTERGENIC
SBS	Chr1	26808712	G-A	HOMO	INTERGENIC
SBS	Chr11	20290432	A-T	HOMO	INTERGENIC
SBS	Chr11	5638900	T-C	HET	INTERGENIC
SBS	Chr12	17829902	C-A	HET	INTERGENIC
SBS	Chr12	19583802	C-G	HOMO	INTRON
SBS	Chr12	8227429	C-G	HET	INTERGENIC
SBS	Chr2	29735607	G-T	HET	INTERGENIC
SBS	Chr2	29735608	G-A	HET	INTERGENIC
SBS	Chr2	9203394	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16190
SBS	Chr3	10367077	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g18490
SBS	Chr3	19226851	C-T	HET	INTERGENIC
SBS	Chr3	22366812	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	231586	G-A	HET	INTERGENIC
SBS	Chr3	231587	G-A	HET	INTERGENIC
SBS	Chr3	29419488	C-A	HOMO	INTERGENIC
SBS	Chr4	27895162	C-T	HOMO	INTERGENIC
SBS	Chr4	30548085	G-A	HOMO	INTERGENIC
SBS	Chr4	7056176	C-G	HET	INTERGENIC
SBS	Chr6	20303048	C-T	HET	INTRON
SBS	Chr7	15798457	G-T	HET	INTERGENIC
SBS	Chr7	23902626	A-G	HET	INTERGENIC
SBS	Chr8	14930418	C-A	HET	INTERGENIC
SBS	Chr8	20309267	A-G	HET	INTERGENIC
SBS	Chr8	6122885	C-T	HET	INTRON
SBS	Chr9	1640082	A-G	HOMO	INTERGENIC
SBS	Chr9	6577363	G-C	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2357189	2357201	12
Deletion	Chr12	4278229	4278231	2
Deletion	Chr11	5554039	5554046	7	LOC_Os11g10230
Deletion	Chr5	6783794	6783795	1
Deletion	Chr6	8414189	8416597	2408	LOC_Os06g14820
Deletion	Chr6	8511775	8511776	1	LOC_Os06g15020
Deletion	Chr4	12560443	12570080	9637	2
Deletion	Chr10	13005243	13005247	4
Deletion	Chr5	13016439	13016440	1
Deletion	Chr1	15317592	15317605	13	LOC_Os01g27440
Deletion	Chr8	17106740	17106755	15	LOC_Os08g28060
Deletion	Chr8	18934588	18934589	1
Deletion	Chr2	21926732	21926733	1
Deletion	Chr3	21967679	21967687	8
Deletion	Chr11	22727069	22727073	4
Deletion	Chr3	23133371	23133376	5
Deletion	Chr5	25702509	25702511	2
Deletion	Chr3	26732162	26732245	83
Deletion	Chr2	28089615	28089631	16
Deletion	Chr7	28155759	28155771	12
Deletion	Chr1	28477512	28477513	1
Deletion	Chr6	28667027	28667032	5	LOC_Os06g47294

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	22983946	22983946	1
Insertion	Chr5	7365322	7365323	2
Insertion	Chr7	27497365	27497366	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7063460	16139875	2
Inversion	Chr1	12659671	13272701	LOC_Os01g23610

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	6220709	Chr8	9187191	LOC_Os09g11220
Translocation	Chr9	11018047	Chr1	13272714	LOC_Os01g23610
Translocation	Chr9	11026775	Chr1	12659666	LOC_Os09g18010
Translocation	Chr5	15640165	Chr2	7069335	LOC_Os02g13270
Translocation	Chr11	15952934	Chr7	11854531

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