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| Mutant Information |
|---|
| Mutant Name | FN876-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN876-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30037563 | A-T | HOMO | INTRON | |
| SBS | Chr1 | 7749174 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 22239435 | C-T | HET | STOP_GAINED | LOC_Os10g41370 |
| SBS | Chr10 | 532601 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr10 | 532606 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr10 | 8266992 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 11516175 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 23294185 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr12 | 516649 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 12681472 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 22046068 | A-C | HOMO | INTRON | |
| SBS | Chr2 | 23253039 | C-T | HOMO | INTRON | |
| SBS | Chr3 | 33545544 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 4744570 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 33639649 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 4736 | T-C | HET | INTRON | |
| SBS | Chr6 | 5821752 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g11110 |
| SBS | Chr6 | 9270494 | T-C | HET | INTRON | |
| SBS | Chr7 | 15740692 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g27140 |
| SBS | Chr7 | 27639509 | T-G | HET | INTRON | |
| SBS | Chr9 | 16024299 | T-C | HET | INTRON | |
| SBS | Chr9 | 19220145 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 19450405 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 8749801 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 9597716 | G-A | HET | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 118454 | 118455 | 1 | LOC_Os01g01250 |
| Deletion | Chr7 | 932184 | 932188 | 4 | |
| Deletion | Chr6 | 941312 | 941322 | 10 | LOC_Os06g02650 |
| Deletion | Chr7 | 1193770 | 1193773 | 3 | |
| Deletion | Chr9 | 8203895 | 8203913 | 18 | |
| Deletion | Chr1 | 8320324 | 8320339 | 15 | |
| Deletion | Chr7 | 10177472 | 10177476 | 4 | |
| Deletion | Chr12 | 12401979 | 12401995 | 16 | |
| Deletion | Chr9 | 13583460 | 13583476 | 16 | |
| Deletion | Chr7 | 18498692 | 18498701 | 9 | |
| Deletion | Chr7 | 21208704 | 21208705 | 1 | LOC_Os07g35460 |
| Deletion | Chr9 | 21773810 | 21773811 | 1 | LOC_Os09g37790 |
| Deletion | Chr5 | 22015699 | 22015713 | 14 | |
| Deletion | Chr3 | 23766415 | 23766416 | 1 | |
| Deletion | Chr5 | 25952948 | 25952952 | 4 | LOC_Os05g44610 |
| Deletion | Chr6 | 28315182 | 28315204 | 22 | |
| Deletion | Chr6 | 29984900 | 29984901 | 1 | |
| Deletion | Chr1 | 30128407 | 30128409 | 2 | LOC_Os01g52430 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 25810310 | 25810321 | 12 | LOC_Os11g42850 |
| Insertion | Chr2 | 17850754 | 17850755 | 2 | |
| Insertion | Chr2 | 24235268 | 24235278 | 11 | |
| Insertion | Chr5 | 6514541 | 6514541 | 1 | |
| Insertion | Chr6 | 22672325 | 22672327 | 3 | |
| Insertion | Chr7 | 12555072 | 12555073 | 2 | |
| Insertion | Chr9 | 18092003 | 18092003 | 1 | LOC_Os09g29760 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 13374739 | 13403035 | |
| Inversion | Chr1 | 22814748 | 39114692 | LOC_Os01g67364 |
| Inversion | Chr4 | 25377102 | 25408314 |
No Translocation