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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11672051	A-T	HET	INTERGENIC
SBS	Chr1	14483092	A-T	HET	INTERGENIC
SBS	Chr1	23390830	T-G	HOMO	INTERGENIC
SBS	Chr1	36849360	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63550
SBS	Chr1	42838885	G-A	HET	INTRON
SBS	Chr10	11478610	T-C	HOMO	INTERGENIC
SBS	Chr10	22559576	A-G	HOMO	INTRON
SBS	Chr11	1912644	C-T	HET	INTRON
SBS	Chr11	19140242	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g32420
SBS	Chr2	11649112	C-G	HET	INTERGENIC
SBS	Chr3	16366420	G-A	HET	INTERGENIC
SBS	Chr3	17234845	A-T	HET	INTERGENIC
SBS	Chr3	18866331	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33000
SBS	Chr5	18474415	C-A	HOMO	INTERGENIC
SBS	Chr6	14417760	C-T	HOMO	INTERGENIC
SBS	Chr6	14417765	A-T	HOMO	INTERGENIC
SBS	Chr6	16451873	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g28860
SBS	Chr7	18769197	A-T	HET	INTERGENIC
SBS	Chr7	18769201	T-G	HET	INTERGENIC
SBS	Chr7	18782918	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31630
SBS	Chr7	18782919	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31630
SBS	Chr7	24200662	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g40360
SBS	Chr7	29351174	T-C	HOMO	INTERGENIC
SBS	Chr8	24267428	T-C	HET	INTRON
SBS	Chr8	25331256	C-T	HET	INTERGENIC
SBS	Chr8	4965632	C-T	HOMO	INTERGENIC
SBS	Chr9	14034660	C-T	HOMO	INTERGENIC
SBS	Chr9	21596494	G-A	HET	INTRON

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	17523	17567	44
Deletion	Chr8	187712	187715	3	LOC_Os08g01290
Deletion	Chr1	1351294	1351304	10
Deletion	Chr5	2891891	2891896	5
Deletion	Chr11	5265590	5265603	13
Deletion	Chr11	5939592	5939606	14
Deletion	Chr9	7842235	7842256	21
Deletion	Chr8	8906916	8906924	8
Deletion	Chr2	13247665	13247667	2
Deletion	Chr3	16054562	16054572	10	LOC_Os03g27950
Deletion	Chr2	20002657	20002675	18
Deletion	Chr5	21568610	21568615	5	LOC_Os05g36930
Deletion	Chr2	26982028	26982029	1
Deletion	Chr1	41919619	41920052	433	LOC_Os01g72310

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	9445153	9445154	2
Insertion	Chr7	11008823	11008832	10
Insertion	Chr9	21048580	21048580	1	LOC_Os09g36470

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4667064	13979010	LOC_Os12g24480
Inversion	Chr10	7694917	17695064	LOC_Os10g14180
Inversion	Chr5	27112795	27208018	2
Inversion	Chr5	27112818	27208020	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	357156	Chr4	20604666	LOC_Os08g01600
Translocation	Chr11	7441399	Chr8	2543900
Translocation	Chr11	7461905	Chr8	2543921
Translocation	Chr10	7686756	Chr7	23121420	LOC_Os10g14180
Translocation	Chr12	13978999	Chr11	1498578	LOC_Os12g24480
Translocation	Chr12	13981046	Chr1	42923870
Translocation	Chr2	14852661	Chr1	41920038	LOC_Os01g72310
Translocation	Chr2	14852662	Chr1	41919614
Translocation	Chr10	17695063	Chr7	23158250

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