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Mutant Information |
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Mutant Name | FN885-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN885-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 33
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 21079068 | C-A | HOMO | INTRON | |
SBS | Chr2 | 2545523 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 4578685 | C-G | HOMO | INTERGENIC | |
SBS | Chr2 | 7254139 | G-A | HOMO | INTERGENIC | |
SBS | Chr2 | 20305686 | T-G | HET | INTERGENIC | |
SBS | Chr2 | 23962042 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 25002109 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 33371848 | A-G | HET | INTERGENIC | |
SBS | Chr3 | 9969810 | T-A | HET | INTERGENIC | |
SBS | Chr3 | 18567176 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 26091609 | A-C | HOMO | INTRON | |
SBS | Chr3 | 33104490 | T-C | HET | INTRON | |
SBS | Chr3 | 33122697 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 3938710 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 27998582 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g47150 |
SBS | Chr5 | 6480293 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 22791252 | C-A | HET | INTRON | |
SBS | Chr5 | 23595838 | A-C | HET | INTERGENIC | |
SBS | Chr6 | 6662304 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 12591436 | C-G | HET | INTERGENIC | |
SBS | Chr6 | 16146687 | C-A | HOMO | INTERGENIC | |
SBS | Chr6 | 16146688 | T-A | HOMO | INTERGENIC | |
SBS | Chr7 | 5440798 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g10130 |
SBS | Chr7 | 10608673 | C-T | HOMO | INTERGENIC | |
SBS | Chr8 | 3804896 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 8339991 | A-G | HET | INTERGENIC | |
SBS | Chr8 | 10173298 | T-G | HET | INTERGENIC | |
SBS | Chr8 | 19354291 | A-G | HET | INTERGENIC | |
SBS | Chr9 | 8873948 | G-T | HOMO | INTERGENIC | |
SBS | Chr11 | 10798655 | A-T | HOMO | INTERGENIC | |
SBS | Chr12 | 9713357 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g16960 |
SBS | Chr12 | 10844427 | G-A | HOMO | INTERGENIC | |
SBS | Chr12 | 19447421 | T-A | HOMO | INTERGENIC |
Deletions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr11 | 438998 | 438999 | 1 | LOC_Os11g01830 |
Deletion | Chr1 | 967639 | 967640 | 1 | |
Deletion | Chr12 | 2127317 | 2127318 | 1 | |
Deletion | Chr6 | 2158175 | 2158947 | 772 | LOC_Os06g04910 |
Deletion | Chr2 | 3177129 | 3177137 | 8 | |
Deletion | Chr8 | 7384957 | 7384974 | 17 | |
Deletion | Chr11 | 7430443 | 7430459 | 16 | |
Deletion | Chr2 | 11256645 | 11256646 | 1 | LOC_Os02g19270 |
Deletion | Chr5 | 12326668 | 12326669 | 1 | LOC_Os05g20954 |
Deletion | Chr12 | 13452759 | 13452763 | 4 | |
Deletion | Chr7 | 15217048 | 15217054 | 6 | |
Deletion | Chr10 | 18899571 | 18899572 | 1 | |
Deletion | Chr8 | 20666356 | 20666357 | 1 | LOC_Os08g33200 |
Deletion | Chr1 | 22071517 | 22071520 | 3 | |
Deletion | Chr12 | 22586453 | 22586455 | 2 | LOC_Os12g36840 |
Deletion | Chr8 | 24873186 | 24873192 | 6 | |
Deletion | Chr8 | 25224867 | 25224868 | 1 | |
Deletion | Chr6 | 27477506 | 27477519 | 13 | |
Deletion | Chr6 | 27659358 | 27659371 | 13 | LOC_Os06g45670 |
Deletion | Chr1 | 29711014 | 29711016 | 2 | |
Deletion | Chr4 | 30623356 | 30623357 | 1 | |
Deletion | Chr3 | 36248384 | 36248389 | 5 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr3 | 6375208 | 6375209 | 2 | |
Insertion | Chr6 | 27452264 | 27452273 | 10 | |
Insertion | Chr3 | 25517229 | 25517230 | 2 | LOC_Os03g45180 |
Insertion | Chr9 | 9472339 | 9472340 | 2 |
No Inversion
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr6 | 2158182 | Chr2 | 35817671 | 2 |
Translocation | Chr6 | 2158928 | Chr2 | 35817621 | 2 |