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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21079068	C-A	HOMO	INTRON
SBS	Chr11	10798655	A-T	HOMO	INTERGENIC
SBS	Chr12	10844427	G-A	HOMO	INTERGENIC
SBS	Chr12	19447421	T-A	HOMO	INTERGENIC
SBS	Chr12	9713357	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16960
SBS	Chr2	20305686	T-G	HET	INTERGENIC
SBS	Chr2	23962042	C-T	HET	INTERGENIC
SBS	Chr2	25002109	C-T	HET	INTERGENIC
SBS	Chr2	2545523	G-A	HET	INTERGENIC
SBS	Chr2	33371848	A-G	HET	INTERGENIC
SBS	Chr2	4578685	C-G	HOMO	INTERGENIC
SBS	Chr2	7254139	G-A	HOMO	INTERGENIC
SBS	Chr3	18567176	C-T	HET	INTERGENIC
SBS	Chr3	26091609	A-C	HOMO	INTRON
SBS	Chr3	33104490	T-C	HET	INTRON
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr3	9969810	T-A	HET	INTERGENIC
SBS	Chr4	27998582	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g47150
SBS	Chr4	3938710	C-T	HOMO	INTERGENIC
SBS	Chr5	22791252	C-A	HET	INTRON
SBS	Chr5	23595838	A-C	HET	INTERGENIC
SBS	Chr5	6480293	C-T	HET	INTERGENIC
SBS	Chr6	12591436	C-G	HET	INTERGENIC
SBS	Chr6	16146687	C-A	HOMO	INTERGENIC
SBS	Chr6	16146688	T-A	HOMO	INTERGENIC
SBS	Chr6	6662304	C-T	HET	INTERGENIC
SBS	Chr7	10608673	C-T	HOMO	INTERGENIC
SBS	Chr7	5440798	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g10130
SBS	Chr8	10173298	T-G	HET	INTERGENIC
SBS	Chr8	19354291	A-G	HET	INTERGENIC
SBS	Chr8	3804896	G-A	HET	INTERGENIC
SBS	Chr8	8339991	A-G	HET	INTERGENIC
SBS	Chr9	8873948	G-T	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	438998	438999	1	LOC_Os11g01830
Deletion	Chr1	967639	967640	1
Deletion	Chr12	2127317	2127318	1
Deletion	Chr6	2158175	2158947	772	LOC_Os06g04910
Deletion	Chr2	3177129	3177137	8
Deletion	Chr8	7384957	7384974	17
Deletion	Chr11	7430443	7430459	16
Deletion	Chr2	11256645	11256646	1	LOC_Os02g19270
Deletion	Chr5	12326668	12326669	1	LOC_Os05g20954
Deletion	Chr12	13452759	13452763	4
Deletion	Chr7	15217048	15217054	6
Deletion	Chr10	18899571	18899572	1
Deletion	Chr8	20666356	20666357	1	LOC_Os08g33200
Deletion	Chr1	22071517	22071520	3
Deletion	Chr12	22586453	22586455	2	LOC_Os12g36840
Deletion	Chr8	24873186	24873192	6
Deletion	Chr8	25224867	25224868	1
Deletion	Chr6	27477506	27477519	13
Deletion	Chr6	27659358	27659371	13	LOC_Os06g45670
Deletion	Chr1	29711014	29711016	2
Deletion	Chr4	30623356	30623357	1
Deletion	Chr3	36248384	36248389	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	25517229	25517230	2	LOC_Os03g45180
Insertion	Chr3	6375208	6375209	2
Insertion	Chr6	27452264	27452273	10
Insertion	Chr9	9472339	9472340	2

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	2158182	Chr2	35817671	2
Translocation	Chr6	2158928	Chr2	35817621	2

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