Search Nipponbare

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13754306	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24400
SBS	Chr1	22883669	A-G	HET	INTRON
SBS	Chr1	34661457	G-T	HET	INTERGENIC
SBS	Chr10	10614113	T-A	HET	INTERGENIC
SBS	Chr10	20026253	A-G	HET	INTRON
SBS	Chr10	20129394	G-T	HET	INTERGENIC
SBS	Chr10	20306528	T-A	HET	INTERGENIC
SBS	Chr10	9130924	C-T	HET	INTERGENIC
SBS	Chr11	2373717	A-T	HET	INTERGENIC
SBS	Chr11	2373718	C-T	HET	INTERGENIC
SBS	Chr11	9495132	C-A	HOMO	INTERGENIC
SBS	Chr12	25078074	T-G	HET	INTERGENIC
SBS	Chr12	840649	C-T	HET	INTERGENIC
SBS	Chr2	246277	T-A	HOMO	INTERGENIC
SBS	Chr2	26794939	C-T	HOMO	INTERGENIC
SBS	Chr3	12622492	C-G	HET	INTERGENIC
SBS	Chr3	34352986	G-A	HET	INTERGENIC
SBS	Chr4	14317018	A-C	HOMO	INTERGENIC
SBS	Chr5	4005652	G-A	HET	INTERGENIC
SBS	Chr5	419412	C-T	HET	UTR_3_PRIME
SBS	Chr6	12672722	C-T	HOMO	INTERGENIC
SBS	Chr6	17652576	T-A	HOMO	INTERGENIC
SBS	Chr6	28604747	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr7	27443068	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	29424073	G-T	HET	INTERGENIC
SBS	Chr7	3383770	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g06920
SBS	Chr7	3998447	A-T	HET	INTERGENIC
SBS	Chr7	8329575	G-A	HOMO	INTERGENIC
SBS	Chr8	8324541	T-C	HOMO	INTERGENIC
SBS	Chr9	13805119	C-G	HOMO	INTRON
SBS	Chr9	1518499	A-G	HET	INTERGENIC
SBS	Chr9	8231003	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	286108	286114	6
Deletion	Chr5	419246	419250	4	LOC_Os05g01690
Deletion	Chr11	2008284	2008294	10
Deletion	Chr5	2547934	2547949	15
Deletion	Chr7	3373082	3373105	23
Deletion	Chr10	3831059	3831060	1
Deletion	Chr8	6004292	6004293	1
Deletion	Chr10	7119307	7119308	1
Deletion	Chr1	8446689	8446692	3
Deletion	Chr11	9073021	9073027	6
Deletion	Chr9	9990843	9990846	3	LOC_Os09g16340
Deletion	Chr6	10418749	10418756	7
Deletion	Chr4	11897960	11897972	12	LOC_Os04g21130
Deletion	Chr8	11911618	11911651	33	LOC_Os08g19890
Deletion	Chr8	11927075	11927076	1	LOC_Os08g19910
Deletion	Chr2	13133790	13133791	1	LOC_Os02g22080
Deletion	Chr9	13389001	13704000	315000	53
Deletion	Chr11	14676954	14676975	21
Deletion	Chr12	17807641	17807655	14
Deletion	Chr7	19035604	19035618	14
Deletion	Chr7	19415308	19415311	3
Deletion	Chr6	23066319	23066327	8
Deletion	Chr6	27763764	27763765	1
Deletion	Chr6	28974001	29012000	38000	10
Deletion	Chr3	31301182	31301185	3
Deletion	Chr2	34048539	34048542	3
Deletion	Chr1	35396297	35396298	1	LOC_Os01g61150

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	18804838	18804841	4
Insertion	Chr4	20701596	20701597	2
Insertion	Chr5	6265174	6265175	2
Insertion	Chr6	5232124	5232124	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	27628527	27631421	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4638822	Chr2	26867153	LOC_Os02g44380
Translocation	Chr10	10201519	Chr2	26867154	LOC_Os02g44380
Translocation	Chr3	11353288	Chr2	4182465	LOC_Os03g20100
Translocation	Chr4	11367242	Chr1	33407001	LOC_Os04g20320
Translocation	Chr4	11367567	Chr1	33407001	LOC_Os04g20320
Translocation	Chr9	13394044	Chr2	4182465	2
Translocation	Chr9	13397008	Chr2	4182450	LOC_Os09g22120

Main menu