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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27654293	C-G	HET	INTERGENIC
SBS	Chr10	16580956	C-T	HET	INTERGENIC
SBS	Chr11	11106939	A-T	HET	INTERGENIC
SBS	Chr11	15045217	C-A	HET	INTERGENIC
SBS	Chr11	19039340	C-G	HET	INTERGENIC
SBS	Chr11	24896147	T-C	HET	INTERGENIC
SBS	Chr11	634190	G-C	HET	INTERGENIC
SBS	Chr12	16557844	T-C	HOMO	INTERGENIC
SBS	Chr12	25761039	G-A	HET	INTERGENIC
SBS	Chr12	4858583	T-G	HET	INTRON
SBS	Chr2	12790139	A-G	HET	INTRON
SBS	Chr2	13612169	C-T	HET	INTERGENIC
SBS	Chr2	16889705	C-T	HET	INTRON
SBS	Chr2	20282309	T-A	HET	INTERGENIC
SBS	Chr2	20797760	T-G	HET	INTERGENIC
SBS	Chr2	4255288	A-C	HET	INTERGENIC
SBS	Chr2	4802991	A-G	HET	UTR_3_PRIME
SBS	Chr4	7257868	A-G	HET	INTERGENIC
SBS	Chr4	8196296	A-G	HET	INTERGENIC
SBS	Chr5	15786623	A-G	HOMO	INTERGENIC
SBS	Chr5	18575184	A-T	HOMO	INTERGENIC
SBS	Chr5	3739891	G-A	HET	INTERGENIC
SBS	Chr5	3739892	G-A	HET	INTERGENIC
SBS	Chr5	8074271	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g14350
SBS	Chr6	16386596	G-T	HET	INTRON
SBS	Chr6	24748850	A-T	HOMO	INTERGENIC
SBS	Chr6	5320001	C-T	HET	INTERGENIC
SBS	Chr6	5320002	A-T	HET	INTERGENIC
SBS	Chr6	9709265	C-T	HOMO	INTERGENIC
SBS	Chr7	10616253	T-C	HET	INTERGENIC
SBS	Chr7	25485911	G-A	HET	INTERGENIC
SBS	Chr7	2625305	A-G	HOMO	INTERGENIC
SBS	Chr7	28846562	A-G	HET	INTERGENIC
SBS	Chr8	410532	C-T	HET	INTERGENIC
SBS	Chr9	20054308	A-G	HOMO	INTRON
SBS	Chr9	22456023	T-A	HOMO	INTRON
SBS	Chr9	3548093	C-T	HET	INTERGENIC
SBS	Chr9	4979645	G-C	HET	UTR_5_PRIME

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	74490	74491	1
Deletion	Chr3	1115880	1115895	15
Deletion	Chr4	1731563	1731576	13
Deletion	Chr3	4664825	4664827	2
Deletion	Chr8	4778428	4778429	1
Deletion	Chr12	4812001	4856000	44000	5
Deletion	Chr1	5093444	5093453	9
Deletion	Chr3	6360005	6360010	5	LOC_Os03g12120
Deletion	Chr12	9301883	9301885	2	LOC_Os12g16280
Deletion	Chr6	9872316	9872317	1	LOC_Os06g17020
Deletion	Chr10	10014175	10014186	11	LOC_Os10g19960
Deletion	Chr7	10615641	10615670	29
Deletion	Chr8	11913528	11913529	1
Deletion	Chr10	13622627	13622628	1
Deletion	Chr4	16063992	16063994	2
Deletion	Chr9	17032601	17032611	10
Deletion	Chr7	17220059	17220060	1
Deletion	Chr11	19323129	19323135	6
Deletion	Chr8	19620989	19620998	9
Deletion	Chr2	20810345	20810346	1
Deletion	Chr12	21247509	21247511	2
Deletion	Chr2	21646001	21727000	81000	8
Deletion	Chr9	22446886	22446887	1
Deletion	Chr1	24167220	24167221	1
Deletion	Chr6	25403053	25403103	50
Deletion	Chr4	31164146	31164148	2
Deletion	Chr1	32973128	32973133	5
Deletion	Chr1	37785394	37785396	2	LOC_Os01g65094

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	20665523	20665523	1
Insertion	Chr2	17969345	17969346	2
Insertion	Chr5	16375533	16375534	2
Insertion	Chr5	4844316	4844317	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15096305	18138985
Inversion	Chr2	21601738	21727805	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	10754470	Chr6	19260595	LOC_Os08g17580
Translocation	Chr12	11272892	Chr9	21454316	LOC_Os12g19381
Translocation	Chr11	19434893	Chr2	33125349	2

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