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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21314180	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	36566114	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	42964580	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g74160
SBS	Chr10	5496528	C-T	HOMO	INTERGENIC
SBS	Chr10	90116	T-A	HET	INTERGENIC
SBS	Chr11	11297706	C-A	HET	INTERGENIC
SBS	Chr11	15629296	C-G	HET	INTERGENIC
SBS	Chr11	17950829	A-T	HOMO	INTERGENIC
SBS	Chr11	17950832	A-T	HOMO	INTERGENIC
SBS	Chr11	17950833	C-T	HOMO	INTERGENIC
SBS	Chr11	2598641	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g05690
SBS	Chr12	13830712	T-C	HOMO	INTERGENIC
SBS	Chr12	20710509	T-C	HOMO	INTRON
SBS	Chr12	25561316	C-A	HOMO	INTERGENIC
SBS	Chr2	30370446	C-T	HOMO	INTERGENIC
SBS	Chr2	3579337	G-A	HET	INTERGENIC
SBS	Chr3	10110706	C-T	HOMO	INTERGENIC
SBS	Chr3	10981788	C-T	HOMO	INTERGENIC
SBS	Chr3	1444216	C-G	HET	INTERGENIC
SBS	Chr3	231348	C-T	HET	INTERGENIC
SBS	Chr4	13068376	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g23020
SBS	Chr4	22953001	G-A	HET	INTERGENIC
SBS	Chr4	871385	C-G	HET	INTERGENIC
SBS	Chr5	14582624	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g25170
SBS	Chr5	8580899	G-A	HOMO	INTERGENIC
SBS	Chr6	26799181	G-A	HOMO	INTERGENIC
SBS	Chr7	28594036	C-T	HOMO	INTERGENIC
SBS	Chr7	8427929	C-T	HET	INTERGENIC
SBS	Chr8	11613799	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19440
SBS	Chr8	1200016	C-G	HET	UTR_5_PRIME
SBS	Chr8	1703868	T-C	HET	INTERGENIC
SBS	Chr8	7262653	G-T	HET	INTERGENIC
SBS	Chr8	7262654	A-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1264019	1264028	9
Deletion	Chr8	2214135	2214149	14
Deletion	Chr5	3541982	3541994	12
Deletion	Chr6	6111054	6111064	10
Deletion	Chr1	6234104	6234106	2
Deletion	Chr9	9982871	9982872	1
Deletion	Chr10	11934578	11934592	14
Deletion	Chr11	16880578	16880580	2
Deletion	Chr11	18259705	18260832	1127	LOC_Os11g31300
Deletion	Chr9	18905795	18905798	3	LOC_Os09g31430
Deletion	Chr5	20383385	20383387	2
Deletion	Chr7	21386421	21386423	2	LOC_Os07g35700
Deletion	Chr7	24704932	24704938	6
Deletion	Chr6	25690836	25690840	4
Deletion	Chr7	26092001	26092002	1
Deletion	Chr1	26130887	26130889	2
Deletion	Chr11	26963867	26963872	5
Deletion	Chr1	34563261	34563275	14
Deletion	Chr3	36395931	36395969	38	LOC_Os03g64400

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	8412118	8412119	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4478005	20345712

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	25499851	Chr4	15519297	LOC_Os12g41150

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