Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18737321	C-G	HET	INTRON
SBS	Chr1	22081116	G-A	HET	INTERGENIC
SBS	Chr1	248081	G-A	HET	INTERGENIC
SBS	Chr1	27178666	A-G	HET	INTERGENIC
SBS	Chr1	30472649	C-T	HOMO	UTR_5_PRIME
SBS	Chr1	36323420	G-A	HET	INTERGENIC
SBS	Chr10	6457271	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11690
SBS	Chr11	20117669	G-A	HET	INTERGENIC
SBS	Chr11	25907133	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42980
SBS	Chr11	4154426	A-T	HOMO	INTRON
SBS	Chr11	7387628	C-T	HET	INTERGENIC
SBS	Chr12	24613480	C-T	HET	INTERGENIC
SBS	Chr2	14658172	G-C	HET	INTERGENIC
SBS	Chr2	6760624	G-A	HET	INTERGENIC
SBS	Chr2	7320621	C-T	HET	INTERGENIC
SBS	Chr3	14898605	G-A	HET	INTERGENIC
SBS	Chr3	17129522	T-G	HET	INTERGENIC
SBS	Chr3	32745092	G-A	HET	UTR_5_PRIME
SBS	Chr4	1304862	C-G	HET	INTERGENIC
SBS	Chr5	1597388	G-T	HET	INTERGENIC
SBS	Chr5	19842763	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g33710
SBS	Chr5	8353133	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14690
SBS	Chr7	11789226	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	9668637	C-T	HOMO	INTERGENIC
SBS	Chr8	12229231	C-T	HOMO	INTERGENIC
SBS	Chr8	14031356	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	5119919	G-A	HET	INTRON
SBS	Chr9	1400581	G-C	HET	INTERGENIC
SBS	Chr9	20804447	A-C	HOMO	INTERGENIC
SBS	Chr9	4034119	T-A	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	5772707	5772717	10
Deletion	Chr2	6755313	6755319	6
Deletion	Chr5	6941513	6941518	5
Deletion	Chr11	11045695	11045711	16
Deletion	Chr12	13924001	13938000	14000	2
Deletion	Chr6	14470001	14639000	169000	29
Deletion	Chr8	18612882	18612887	5
Deletion	Chr6	19723001	19930000	207000	28
Deletion	Chr11	23348213	23348215	2	LOC_Os11g39209
Deletion	Chr3	25719758	25719762	4	LOC_Os03g45570
Deletion	Chr1	25859067	25859072	5
Deletion	Chr5	26337843	26340791	2948
Deletion	Chr1	31052818	31052827	9
Deletion	Chr1	31596010	31601553	5543	2
Deletion	Chr2	34554219	34554237	18
Deletion	Chr2	34640877	34640898	21	LOC_Os02g56550
Deletion	Chr2	34890157	34890177	20	LOC_Os02g56920
Deletion	Chr3	35362942	35362945	3	LOC_Os03g62430
Deletion	Chr3	35841700	35841703	3	LOC_Os03g63440
Deletion	Chr1	37465903	37465906	3

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	9452252	9452252	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7310719	7456455	2
Inversion	Chr5	7310742	7456471	2
Inversion	Chr2	8090962	8183885	LOC_Os02g14770
Inversion	Chr2	8091006	8183862	LOC_Os02g14770
Inversion	Chr2	31540754	32530921	LOC_Os02g53140

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	28096154	Chr2	34504967	LOC_Os03g49360
Translocation	Chr3	28097772	Chr2	34505021	LOC_Os03g49360

Main menu