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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7927811	T-G	HET	INTERGENIC
SBS	Chr1	28237369	C-T	HET	INTRON
SBS	Chr3	7285933	T-G	HET	INTRON
SBS	Chr3	9729442	A-G	HET	INTERGENIC
SBS	Chr3	9729445	A-T	HET	INTERGENIC
SBS	Chr3	32364484	C-T	HOMO	INTERGENIC
SBS	Chr3	34787007	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g61260
SBS	Chr4	29058079	C-A	HOMO	INTERGENIC
SBS	Chr5	19847643	G-T	HOMO	INTERGENIC
SBS	Chr6	15128866	C-A	HOMO	INTERGENIC
SBS	Chr7	6731379	G-T	HET	INTERGENIC
SBS	Chr7	6731380	G-T	HET	INTERGENIC
SBS	Chr7	13175056	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g23370
SBS	Chr7	13175058	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g23370
SBS	Chr7	26420001	C-T	HET	INTRON
SBS	Chr7	28093270	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr8	23391107	T-A	HOMO	INTRON
SBS	Chr9	8282440	G-A	HET	INTERGENIC
SBS	Chr10	6420068	C-T	HET	INTERGENIC
SBS	Chr10	7419603	C-T	HET	UTR_5_PRIME
SBS	Chr10	13137452	C-T	HOMO	INTERGENIC
SBS	Chr10	15937240	C-T	HOMO	INTERGENIC
SBS	Chr11	3616263	A-T	HOMO	INTRON
SBS	Chr11	15012105	T-A	HOMO	INTRON
SBS	Chr12	2603125	G-A	HET	INTRON
SBS	Chr12	2818188	C-G	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1342468	1342469	1
Deletion	Chr5	1510891	1510922	31
Deletion	Chr11	4314704	4315845	1141	LOC_Os11g08220
Deletion	Chr9	4931277	4931279	2
Deletion	Chr5	5609953	5609955	2
Deletion	Chr11	5612483	5612484	1
Deletion	Chr8	6345222	6345226	4
Deletion	Chr12	9766781	9766782	1	LOC_Os12g17070
Deletion	Chr8	10272724	10272733	9
Deletion	Chr1	13178790	13179719	929
Deletion	Chr7	22058163	22058173	10	LOC_Os07g36820
Deletion	Chr11	22183635	22183638	3
Deletion	Chr2	23037443	23037462	19	LOC_Os02g38110
Deletion	Chr5	25470378	25470379	1
Deletion	Chr1	26131320	26131335	15
Deletion	Chr3	26304876	26304882	6
Deletion	Chr11	27212191	27212197	6
Deletion	Chr2	27504890	27508826	3936	LOC_Os02g45280
Deletion	Chr11	27679980	27679981	1
Deletion	Chr1	32807958	32807959	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	8990789	8990789	1
Insertion	Chr1	10371150	10371151	2
Insertion	Chr7	12994702	12994706	5
Insertion	Chr5	10776599	10776602	4
Insertion	Chr8	23444854	23444855	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7575597	9866882	2
Inversion	Chr12	7575608	9866896	2
Inversion	Chr12	7638240	9452155	LOC_Os12g13590
Inversion	Chr2	27316869	27378612	2
Inversion	Chr2	27318488	27384004	LOC_Os02g45054
Inversion	Chr3	35956205	36134510	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5063841	Chr6	3022425
Translocation	Chr9	6226364	Chr2	27316874	LOC_Os02g45054
Translocation	Chr9	6226370	Chr2	27318507	LOC_Os02g45054
Translocation	Chr11	13396998	Chr2	2470221
Translocation	Chr10	17172399	Chr8	6527376
Translocation	Chr4	30049276	Chr1	33678602	2
Translocation	Chr4	30479890	Chr1	33678582	LOC_Os01g58270

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