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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21655012	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	13397231	C-A	HET	INTRON
SBS	Chr10	3866302	C-T	HET	INTERGENIC
SBS	Chr10	4245072	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g07966
SBS	Chr10	4539377	A-G	HET	INTERGENIC
SBS	Chr11	21454551	C-A	HOMO	INTERGENIC
SBS	Chr12	22147999	G-T	HET	INTERGENIC
SBS	Chr12	22347169	A-G	HOMO	INTERGENIC
SBS	Chr2	27589543	A-G	HET	INTERGENIC
SBS	Chr2	7466577	C-T	HET	UTR_3_PRIME
SBS	Chr3	10988430	G-A	HET	INTERGENIC
SBS	Chr3	15076670	G-T	HET	INTERGENIC
SBS	Chr3	16145161	C-G	HET	INTERGENIC
SBS	Chr3	21196461	T-A	HET	INTRON
SBS	Chr3	21550227	C-A	HET	INTERGENIC
SBS	Chr3	31590530	T-C	HET	INTERGENIC
SBS	Chr3	33454043	C-G	HET	SYNONYMOUS_CODING
SBS	Chr3	34066233	T-C	HET	INTERGENIC
SBS	Chr4	27331286	G-A	HOMO	INTERGENIC
SBS	Chr4	29279097	A-T	HET	INTERGENIC
SBS	Chr4	4431993	G-A	HET	INTERGENIC
SBS	Chr4	5912	G-A	HET	INTRON
SBS	Chr4	7938684	T-A	HET	INTERGENIC
SBS	Chr5	22344725	A-G	HET	INTERGENIC
SBS	Chr5	7879630	G-T	HET	INTERGENIC
SBS	Chr6	11598457	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g20210
SBS	Chr6	23800533	C-A	HET	INTERGENIC
SBS	Chr6	25822391	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42980
SBS	Chr7	26110332	T-G	HET	INTERGENIC
SBS	Chr7	27228748	T-G	HOMO	INTERGENIC
SBS	Chr7	8588492	C-G	HET	INTERGENIC
SBS	Chr8	11098165	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18100
SBS	Chr8	17604534	C-T	HET	INTERGENIC
SBS	Chr8	1867446	C-A	HOMO	INTERGENIC
SBS	Chr8	20389512	T-G	HOMO	INTERGENIC
SBS	Chr9	17071614	T-C	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1752506	1752514	8
Deletion	Chr8	1785977	1785978	1
Deletion	Chr8	2434013	2434016	3	LOC_Os08g04840
Deletion	Chr8	3399714	3399727	13
Deletion	Chr10	3793461	3793475	14
Deletion	Chr1	5242914	5262289	19375	6
Deletion	Chr2	6224195	6224202	7
Deletion	Chr10	6250799	6250824	25	LOC_Os10g11260
Deletion	Chr9	9926045	9926053	8
Deletion	Chr4	12383881	12383908	27
Deletion	Chr10	13296289	13296292	3
Deletion	Chr4	14209298	14209303	5
Deletion	Chr2	14352500	14352506	6
Deletion	Chr4	16519435	16519440	5
Deletion	Chr9	16897142	16897143	1	LOC_Os09g27770
Deletion	Chr9	18259463	18269170	9707	2
Deletion	Chr8	19276346	19276347	1
Deletion	Chr3	20033468	20033475	7
Deletion	Chr1	21409211	21409217	6
Deletion	Chr12	21872597	21872600	3
Deletion	Chr1	23854567	23854570	3
Deletion	Chr12	26106422	26106423	1	LOC_Os12g42100
Deletion	Chr2	27020721	27020726	5	LOC_Os02g44590
Deletion	Chr1	27134421	27134428	7
Deletion	Chr6	27215895	27215899	4
Deletion	Chr7	28620342	28620550	208	LOC_Os07g47920
Deletion	Chr3	32309854	32309855	1
Deletion	Chr3	33427080	33427091	11

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11739696	11739699	4
Insertion	Chr1	33303789	33303789	1	LOC_Os01g57599
Insertion	Chr12	27134457	27134460	4
Insertion	Chr3	32575446	32575446	1
Insertion	Chr3	32950453	32950454	2
Insertion	Chr5	21765747	21765750	4
Insertion	Chr5	29627689	29627692	4

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	308754	1087425	LOC_Os04g01439
Inversion	Chr2	3032854	17852685
Inversion	Chr9	9434550	9578681	LOC_Os09g15700
Inversion	Chr9	9578686	14526956	LOC_Os09g15700
Inversion	Chr5	15866057	17096989	LOC_Os05g29110
Inversion	Chr5	16183344	17096921	LOC_Os05g29110
Inversion	Chr11	28440204	28440390

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	449000	Chr3	10988075	2
Translocation	Chr5	449001	Chr3	10977806	2
Translocation	Chr12	1286706	Chr2	15353558	LOC_Os02g26130
Translocation	Chr10	2161990	Chr1	5243200	LOC_Os01g10040
Translocation	Chr10	2166305	Chr1	5262353	LOC_Os01g10090
Translocation	Chr5	15865971	Chr1	5242913	LOC_Os01g10040
Translocation	Chr5	17096917	Chr1	5243196	2
Translocation	Chr9	18268281	Chr7	27006693	LOC_Os07g45260
Translocation	Chr9	18269155	Chr7	27006692	2
Translocation	Chr3	22942522	Chr1	39679149
Translocation	Chr11	27827885	Chr7	25412078	LOC_Os07g42440
Translocation	Chr7	28620355	Chr3	3374800	LOC_Os07g47920
Translocation	Chr7	28620541	Chr3	3374798	LOC_Os07g47920
Translocation	Chr3	34354293	Chr2	18055340

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