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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12474874	T-C	HET	INTRON
SBS	Chr1	28962461	C-T	HOMO	INTERGENIC
SBS	Chr1	31032108	C-G	HET	INTERGENIC
SBS	Chr1	40538178	C-T	HET	INTERGENIC
SBS	Chr1	8792102	G-T	HET	UTR_3_PRIME
SBS	Chr10	1699819	T-C	HOMO	INTERGENIC
SBS	Chr10	9590013	C-T	HET	INTERGENIC
SBS	Chr11	16153168	G-A	HET	INTRON
SBS	Chr11	976166	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02880
SBS	Chr12	19758060	T-C	HOMO	INTERGENIC
SBS	Chr12	20403547	T-C	HET	INTERGENIC
SBS	Chr3	13420603	A-G	HET	INTERGENIC
SBS	Chr3	18699629	G-C	HET	INTERGENIC
SBS	Chr3	28984926	A-G	HOMO	INTERGENIC
SBS	Chr3	31789385	A-G	HET	INTERGENIC
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	15142001	T-A	HET	INTRON
SBS	Chr4	28698906	G-A	HET	INTERGENIC
SBS	Chr4	32705677	A-G	HET	INTERGENIC
SBS	Chr5	2117431	A-G	HET	INTERGENIC
SBS	Chr5	22022685	A-G	HET	INTERGENIC
SBS	Chr5	28317162	A-C	HET	INTRON
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	5420611	G-C	HET	UTR_3_PRIME
SBS	Chr5	8362162	T-C	HOMO	INTERGENIC
SBS	Chr5	9894496	G-A	HOMO	INTERGENIC
SBS	Chr6	21793424	A-C	HET	INTERGENIC
SBS	Chr6	26842213	C-T	HOMO	INTERGENIC
SBS	Chr6	26959456	G-T	HOMO	INTERGENIC
SBS	Chr7	16789412	C-T	HET	INTRON
SBS	Chr7	9124012	C-T	HET	INTERGENIC
SBS	Chr8	2737393	T-G	HOMO	INTRON
SBS	Chr8	8203753	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13760
SBS	Chr9	11084551	C-G	HET	INTRON
SBS	Chr9	12057989	C-T	HET	INTRON
SBS	Chr9	14222759	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23850
SBS	Chr9	17170804	C-A	HET	INTERGENIC
SBS	Chr9	22138051	T-A	HET	INTERGENIC
SBS	Chr9	4296779	T-C	HET	INTRON

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	161943	161946	3
Deletion	Chr10	279240	279244	4
Deletion	Chr10	1085098	1085108	10
Deletion	Chr12	1290015	1290023	8
Deletion	Chr10	1795812	1795813	1
Deletion	Chr10	3398709	3398725	16
Deletion	Chr8	4934703	4934717	14	LOC_Os08g08550
Deletion	Chr2	6146143	6146144	1	LOC_Os02g11859
Deletion	Chr5	6794963	6794970	7	LOC_Os05g11940
Deletion	Chr3	6838868	6838869	1
Deletion	Chr8	7504235	7504236	1
Deletion	Chr4	8512337	8512339	2
Deletion	Chr3	8656005	8656015	10
Deletion	Chr2	8799116	8799117	1
Deletion	Chr8	11183956	11183971	15	LOC_Os08g18730
Deletion	Chr4	15312921	15312934	13
Deletion	Chr3	15595948	15595950	2
Deletion	Chr5	18588676	18588677	1
Deletion	Chr5	18606001	18697000	91000	12
Deletion	Chr3	20008444	20008452	8
Deletion	Chr2	20120951	20120961	10
Deletion	Chr3	20157168	20157173	5	LOC_Os03g36350
Deletion	Chr1	20990948	20990950	2
Deletion	Chr7	21173916	21173922	6
Deletion	Chr5	23139216	23139230	14	LOC_Os05g39450
Deletion	Chr1	26307667	26307669	2
Deletion	Chr4	26326724	26326729	5	LOC_Os04g44480
Deletion	Chr6	26978001	26987000	9000	2
Deletion	Chr2	27223355	27223362	7
Deletion	Chr6	27493991	27494001	10
Deletion	Chr8	27625588	27625590	2
Deletion	Chr6	29927144	29927157	13	LOC_Os06g49390
Deletion	Chr2	30866048	30866053	5
Deletion	Chr1	39876848	39876855	7	LOC_Os01g68660

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	20273415	20273416	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	19022648	20756129	LOC_Os05g32544
Inversion	Chr6	26986758	27228213	LOC_Os06g45020

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1631234	Chr5	7511900	LOC_Os12g03940
Translocation	Chr12	3661296	Chr3	33837597
Translocation	Chr12	3662760	Chr3	33837520
Translocation	Chr12	3662764	Chr5	18696837
Translocation	Chr12	3668689	Chr6	27228216	LOC_Os06g45020
Translocation	Chr12	9066726	Chr9	12080317
Translocation	Chr5	11351935	Chr2	604382	2
Translocation	Chr8	15765017	Chr3	15248515	2
Translocation	Chr4	31353352	Chr2	32187635

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