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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24459524	T-C	HET	INTERGENIC
SBS	Chr1	7863400	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g14050
SBS	Chr10	20285965	T-C	HOMO	INTERGENIC
SBS	Chr12	3078053	T-A	HET	INTERGENIC
SBS	Chr2	24831538	C-T	HET	INTRON
SBS	Chr3	19346358	T-C	HOMO	INTERGENIC
SBS	Chr3	24361482	A-T	HET	INTERGENIC
SBS	Chr3	26434709	T-A	HET	INTRON
SBS	Chr4	19565330	A-T	HET	INTRON
SBS	Chr4	32478404	G-A	HET	INTERGENIC
SBS	Chr5	10148581	C-A	HET	INTERGENIC
SBS	Chr5	17214284	T-A	HET	INTRON
SBS	Chr5	3917381	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	568387	C-A	HOMO	INTERGENIC
SBS	Chr5	7233738	G-A	HOMO	INTERGENIC
SBS	Chr6	25707239	G-A	HET	INTERGENIC
SBS	Chr6	26469474	G-A	HET	INTERGENIC
SBS	Chr6	30403502	C-A	HET	INTERGENIC
SBS	Chr7	13692108	T-A	HET	INTERGENIC
SBS	Chr7	22781323	A-G	HOMO	INTRON
SBS	Chr8	5214588	C-T	HET	INTERGENIC
SBS	Chr9	2792324	A-C	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3381	3382	1
Deletion	Chr6	204261	204264	3	LOC_Os06g01320
Deletion	Chr12	779001	907000	128000	24
Deletion	Chr2	1463407	1463411	4
Deletion	Chr4	1879442	1879457	15	LOC_Os04g04070
Deletion	Chr2	2889276	2889280	4	LOC_Os02g05850
Deletion	Chr1	3529749	3529757	8
Deletion	Chr12	4222777	4222778	1
Deletion	Chr12	7348647	7348652	5
Deletion	Chr12	8349767	8349768	1
Deletion	Chr2	9109234	9109252	18
Deletion	Chr1	9300345	9300353	8
Deletion	Chr7	14303328	14303329	1
Deletion	Chr7	15393785	15393787	2
Deletion	Chr1	16966967	16966975	8	LOC_Os01g31020
Deletion	Chr5	20910043	20910048	5
Deletion	Chr7	24045888	24045891	3	LOC_Os07g40050
Deletion	Chr5	27393050	27393053	3
Deletion	Chr2	33055644	33055650	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	33502228	33502229	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	910487	1239386	LOC_Os12g02660
Inversion	Chr2	2139207	2151936	LOC_Os02g04730
Inversion	Chr2	2139244	2151959	LOC_Os02g04730
Inversion	Chr2	15635916	17026235	2
Inversion	Chr4	19819990	19909091	LOC_Os04g32820

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	751070	Chr2	2691933
Translocation	Chr12	888354	Chr5	15739828	LOC_Os12g02570
Translocation	Chr12	907459	Chr2	15635956	2
Translocation	Chr12	910477	Chr2	17026235	2
Translocation	Chr11	1003709	Chr3	15239876	LOC_Os03g26690
Translocation	Chr11	1474966	Chr9	2063963	2
Translocation	Chr6	5893165	Chr2	17306458	LOC_Os06g11230
Translocation	Chr10	14272468	Chr1	9224470	LOC_Os10g27080
Translocation	Chr10	14272470	Chr1	9223867	LOC_Os10g27080
Translocation	Chr10	18628327	Chr5	9638215
Translocation	Chr4	34006449	Chr3	18216866	LOC_Os03g31839

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