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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15335726	G-T	HET	INTERGENIC
SBS	Chr1	16640000	G-A	HET	INTERGENIC
SBS	Chr1	40631854	T-G	HET	INTERGENIC
SBS	Chr1	40872185	C-A	HET	INTERGENIC
SBS	Chr10	15331023	G-A	HOMO	INTRON
SBS	Chr10	15331040	A-T	HOMO	INTRON
SBS	Chr10	8661493	A-G	HET	INTERGENIC
SBS	Chr11	19226427	T-A	HOMO	INTERGENIC
SBS	Chr11	2045432	G-A	HET	INTERGENIC
SBS	Chr12	12277195	C-T	HET	INTERGENIC
SBS	Chr2	10524337	C-A	HET	INTRON
SBS	Chr2	6071945	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	12163501	G-A	HET	INTERGENIC
SBS	Chr3	12550076	T-A	HET	INTRON
SBS	Chr3	13116834	C-T	HET	INTERGENIC
SBS	Chr4	11676525	G-A	HET	INTERGENIC
SBS	Chr4	22379155	C-T	HOMO	UTR_3_PRIME
SBS	Chr4	27649576	A-G	HET	INTERGENIC
SBS	Chr5	13875954	A-T	HET	INTRON
SBS	Chr5	16326650	A-T	HET	INTERGENIC
SBS	Chr5	25086131	G-A	HET	INTERGENIC
SBS	Chr5	28656904	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g49970
SBS	Chr6	12115387	G-A	HOMO	INTERGENIC
SBS	Chr6	2541110	G-A	HOMO	INTERGENIC
SBS	Chr6	7043590	C-T	HET	INTERGENIC
SBS	Chr7	25927951	T-G	HET	INTRON
SBS	Chr8	11126563	T-C	HOMO	INTERGENIC
SBS	Chr9	402397	A-G	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1571843	1571850	7	LOC_Os04g03579
Deletion	Chr10	5369237	5369238	1	LOC_Os10g09920
Deletion	Chr3	6282479	6282485	6	LOC_Os03g11980
Deletion	Chr8	8050365	8050373	8
Deletion	Chr12	9448001	11030000	1582000	238
Deletion	Chr12	10837491	10837498	7
Deletion	Chr1	13570362	13570364	2
Deletion	Chr12	14451689	14451690	1
Deletion	Chr5	15533964	15533972	8
Deletion	Chr10	15949190	15949195	5
Deletion	Chr10	16677842	16677843	1	LOC_Os10g31810
Deletion	Chr9	17951057	17951058	1	LOC_Os09g29510
Deletion	Chr2	18775767	18775768	1	LOC_Os02g31290
Deletion	Chr1	31435365	31435366	1

No Insertion

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1862954	1921783	LOC_Os05g04150
Inversion	Chr5	1862980	1921793	LOC_Os05g04150
Inversion	Chr7	5245084	5505600	2
Inversion	Chr11	9134393	27265402
Inversion	Chr4	29633855	29645943

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2994164	Chr4	20494482
Translocation	Chr8	4115815	Chr7	19337113
Translocation	Chr7	5505613	Chr5	1862979	2
Translocation	Chr7	5505844	Chr5	1921792	LOC_Os07g10250
Translocation	Chr12	5600329	Chr10	7819420
Translocation	Chr4	6139713	Chr1	17190491	LOC_Os04g11230
Translocation	Chr9	6280172	Chr8	18146151
Translocation	Chr6	8086714	Chr5	5898797
Translocation	Chr4	8816658	Chr3	21440252
Translocation	Chr9	12160255	Chr7	5516692	LOC_Os09g20270
Translocation	Chr10	13618676	Chr2	20514615
Translocation	Chr3	17277777	Chr2	16784742	2
Translocation	Chr12	23183547	Chr6	23504958	LOC_Os12g37760
Translocation	Chr5	28724667	Chr3	9391697	LOC_Os05g50120

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