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| Mutant Information |
|---|
| Mutant Name | FN906-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN906-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13471893 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 14653909 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g25839 |
| SBS | Chr1 | 8881700 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 9827456 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 12609402 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24560 |
| SBS | Chr10 | 1927194 | C-T | HET | INTRON | |
| SBS | Chr10 | 3853397 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 27094813 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g44770 |
| SBS | Chr11 | 3641216 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g07240 |
| SBS | Chr2 | 14578422 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 18961172 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g32090 |
| SBS | Chr2 | 18961173 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g32090 |
| SBS | Chr2 | 8039726 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 12659688 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 325840 | G-C | HET | INTRON | |
| SBS | Chr4 | 15504068 | C-G | HOMO | INTRON | |
| SBS | Chr4 | 17204763 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 19648492 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 22349435 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 23850898 | T-C | HOMO | UTR_5_PRIME | |
| SBS | Chr4 | 2819550 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05570 |
| SBS | Chr6 | 12581173 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 24196326 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 13387952 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 18587653 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 15695957 | G-A | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 4516171 | 4516174 | 3 | |
| Deletion | Chr1 | 6998251 | 6998262 | 11 | |
| Deletion | Chr5 | 8759913 | 8759919 | 6 | |
| Deletion | Chr6 | 9366284 | 9366288 | 4 | LOC_Os06g16400 |
| Deletion | Chr11 | 13545498 | 13545499 | 1 | |
| Deletion | Chr10 | 14302309 | 14302315 | 6 | LOC_Os10g27140 |
| Deletion | Chr1 | 14616001 | 14654000 | 38000 | 3 |
| Deletion | Chr11 | 19470205 | 19470206 | 1 | |
| Deletion | Chr3 | 19793176 | 19793179 | 3 | |
| Deletion | Chr3 | 21650826 | 21650827 | 1 | |
| Deletion | Chr12 | 21786531 | 21793631 | 7100 | |
| Deletion | Chr5 | 25111413 | 25111414 | 1 | |
| Deletion | Chr7 | 29543620 | 29543624 | 4 | LOC_Os07g49320 |
| Deletion | Chr3 | 30313784 | 30313788 | 4 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 10356809 | 10356813 | 5 | |
| Insertion | Chr3 | 11684668 | 11684671 | 4 | |
| Insertion | Chr6 | 6972233 | 6972236 | 4 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5741757 | Chr11 | 10519555 | 2 |
| Translocation | Chr5 | 6670710 | Chr3 | 1025860 | 2 |
| Translocation | Chr5 | 6672393 | Chr3 | 1025788 | LOC_Os03g02730 |
| Translocation | Chr12 | 12883462 | Chr10 | 4481282 | LOC_Os10g08290 |