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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	28486718	G-T	HET	INTERGENIC
SBS	Chr3	13387294	T-C	HET	INTERGENIC
SBS	Chr3	19696004	C-T	HET	INTRON
SBS	Chr4	18433594	T-C	HET	INTERGENIC
SBS	Chr5	3595057	C-T	HET	INTERGENIC
SBS	Chr5	6243350	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g11110
SBS	Chr5	18556811	T-A	HET	INTERGENIC
SBS	Chr5	18556813	C-A	HET	INTERGENIC
SBS	Chr5	20771356	G-A	HOMO	INTERGENIC
SBS	Chr6	2936923	A-T	HET	INTERGENIC
SBS	Chr6	3551374	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g07390
SBS	Chr6	11937124	T-C	HET	INTERGENIC
SBS	Chr7	15482443	G-A	HET	INTERGENIC
SBS	Chr7	25927431	A-G	HOMO	INTRON
SBS	Chr7	27358506	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g45840
SBS	Chr9	5790559	T-C	HOMO	INTERGENIC
SBS	Chr9	10140519	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g16530
SBS	Chr10	20714409	T-A	HOMO	INTERGENIC
SBS	Chr11	10667584	G-A	HOMO	STOP_GAINED	LOC_Os11g18790
SBS	Chr11	17692768	A-C	HET	INTERGENIC
SBS	Chr11	28934903	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47970
SBS	Chr12	2870010	T-G	HET	INTERGENIC
SBS	Chr12	11108215	A-T	HET	STOP_GAINED	LOC_Os12g19130
SBS	Chr12	11887782	A-T	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2309498	2309501	3	LOC_Os12g05200
Deletion	Chr4	3280667	3280670	3
Deletion	Chr10	5945018	5945027	9
Deletion	Chr1	6669467	6669472	5	LOC_Os01g12230
Deletion	Chr2	7218917	7218918	1
Deletion	Chr2	7218925	7218926	1
Deletion	Chr10	7732944	7732946	2	LOC_Os10g14260
Deletion	Chr10	8100364	8100369	5
Deletion	Chr12	9085801	9085817	16
Deletion	Chr3	10207997	10208016	19	LOC_Os03g18200
Deletion	Chr12	12803314	12803320	6
Deletion	Chr5	14072060	14072069	9	LOC_Os05g24330
Deletion	Chr9	15373569	15373570	1
Deletion	Chr10	17460299	17460300	1
Deletion	Chr5	18357414	18357465	51	LOC_Os05g31550
Deletion	Chr1	19683046	19683050	4
Deletion	Chr8	20413267	20413271	4	LOC_Os08g32920
Deletion	Chr2	20777564	20777568	4
Deletion	Chr2	20897088	20897100	12
Deletion	Chr11	21850308	21850318	10	LOC_Os11g37010
Deletion	Chr7	25201785	25201792	7
Deletion	Chr2	26701981	26701986	5	LOC_Os02g44134
Deletion	Chr6	27528871	27528883	12
Deletion	Chr8	27604306	27604307	1
Deletion	Chr5	27881824	27881844	20
Deletion	Chr4	31712736	31712743	7
Deletion	Chr2	35494601	35494607	6

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	25825589	25825591	3
Insertion	Chr9	8981681	8981682	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19406246	19742156	2

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	754124	Chr9	20686675
Translocation	Chr10	912881	Chr4	21777221	LOC_Os10g02480
Translocation	Chr4	2678352	Chr1	947455	2
Translocation	Chr12	10562985	Chr5	1755867
Translocation	Chr12	11163391	Chr3	21207019	2
Translocation	Chr9	11768600	Chr7	19406516	2
Translocation	Chr6	12706270	Chr3	33350901
Translocation	Chr12	15670106	Chr1	2952766	2
Translocation	Chr9	18474662	Chr7	19742163	LOC_Os07g33050
Translocation	Chr9	18474668	Chr7	19768407	LOC_Os07g33100
Translocation	Chr11	21259096	Chr8	316757
Translocation	Chr12	26364661	Chr7	19406450	2
Translocation	Chr6	27804545	Chr1	7229305

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