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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16454432	G-A	HOMO	INTERGENIC
SBS	Chr1	17414983	T-G	HOMO	INTERGENIC
SBS	Chr1	39278443	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g67580
SBS	Chr1	40682834	C-A	HET	SYNONYMOUS_CODING
SBS	Chr1	6289971	A-T	HET	INTRON
SBS	Chr1	7547040	T-C	HET	UTR_5_PRIME
SBS	Chr1	7834258	T-C	HET	INTERGENIC
SBS	Chr10	15664255	T-C	HET	INTRON
SBS	Chr10	5874190	G-A	HET	INTERGENIC
SBS	Chr10	6595022	A-G	HET	INTERGENIC
SBS	Chr10	8309036	G-C	HET	INTERGENIC
SBS	Chr11	17840071	C-T	HET	INTERGENIC
SBS	Chr11	17840072	C-T	HET	INTERGENIC
SBS	Chr11	6187970	G-A	HET	INTERGENIC
SBS	Chr2	34410970	C-G	HOMO	INTRON
SBS	Chr2	5981645	G-A	HET	INTERGENIC
SBS	Chr2	6677207	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g12750
SBS	Chr3	15746664	T-A	HOMO	INTERGENIC
SBS	Chr3	26938162	T-A	HET	INTERGENIC
SBS	Chr3	27096791	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47754
SBS	Chr3	27939509	C-T	HET	INTRON
SBS	Chr3	7977708	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	21879189	G-A	HOMO	UTR_3_PRIME
SBS	Chr5	13225335	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g23190
SBS	Chr6	12242615	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21180
SBS	Chr6	29468396	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g48710
SBS	Chr6	7064608	C-T	HET	INTRON
SBS	Chr7	17605640	G-A	HOMO	INTERGENIC
SBS	Chr8	15473392	C-T	HET	INTERGENIC
SBS	Chr8	15937045	G-A	HET	INTRON
SBS	Chr8	18997007	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	22242183	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35250
SBS	Chr8	28141586	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44810

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	3116651	3116655	4	LOC_Os08g05810
Deletion	Chr12	4718910	4718911	1
Deletion	Chr3	5187222	5187233	11
Deletion	Chr6	5910639	5910640	1
Deletion	Chr3	7308624	7308625	1
Deletion	Chr3	7479713	7479714	1
Deletion	Chr3	8115060	8115062	2
Deletion	Chr2	8126695	8126703	8
Deletion	Chr5	8933043	8933067	24
Deletion	Chr1	11395795	11395804	9
Deletion	Chr10	14131850	14131852	2
Deletion	Chr10	15464990	15464992	2
Deletion	Chr2	15887100	15887102	2
Deletion	Chr4	15962746	15962755	9
Deletion	Chr4	16447514	16448154	640	LOC_Os04g27840
Deletion	Chr2	17182648	17182654	6
Deletion	Chr1	17802644	17802656	12
Deletion	Chr8	18148001	18223000	75000	9
Deletion	Chr3	19022773	19022775	2	LOC_Os03g33250
Deletion	Chr9	20029017	20029021	4
Deletion	Chr3	20165359	20165378	19
Deletion	Chr3	21814091	21814095	4
Deletion	Chr12	24236399	24236415	16
Deletion	Chr6	24955313	24955316	3	LOC_Os06g41670
Deletion	Chr3	26960470	26960493	23
Deletion	Chr12	27277306	27277308	2
Deletion	Chr5	27292465	27292475	10	LOC_Os05g47640
Deletion	Chr1	27414361	27414362	1
Deletion	Chr1	38241934	38241940	6

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	8211430	8211430	1
Insertion	Chr12	1185381	1185381	1
Insertion	Chr3	17832414	17832420	7	LOC_Os03g31300
Insertion	Chr4	19690674	19690675	2	LOC_Os04g32670
Insertion	Chr4	21130579	21130580	2
Insertion	Chr5	11628116	11628116	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	18144177	20009579	LOC_Os08g32300
Inversion	Chr8	18223067	20009595	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	5678755	Chr1	22198164
Translocation	Chr10	6595051	Chr4	7489899
Translocation	Chr12	12883304	Chr10	4480981	LOC_Os10g08290
Translocation	Chr11	14627735	Chr1	5228946	LOC_Os01g10030
Translocation	Chr12	21538364	Chr8	18146558	LOC_Os12g35410
Translocation	Chr3	22942505	Chr1	39679150
Translocation	Chr11	27253702	Chr7	22207938

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