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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24292437	C-T	HOMO	INTERGENIC
SBS	Chr1	24838306	G-A	HET	INTERGENIC
SBS	Chr1	27168784	T-C	HET	INTERGENIC
SBS	Chr1	27206905	T-A	HET	INTERGENIC
SBS	Chr1	3624519	T-G	HET	INTRON
SBS	Chr1	36846060	G-A	HET	INTERGENIC
SBS	Chr1	51007	G-A	HET	INTRON
SBS	Chr10	10981069	C-T	HET	INTERGENIC
SBS	Chr10	1240199	T-A	HOMO	INTRON
SBS	Chr11	15681189	C-G	HET	INTERGENIC
SBS	Chr11	24294838	T-A	HOMO	INTERGENIC
SBS	Chr12	19898385	A-C	HET	INTRON
SBS	Chr12	22831884	C-T	HET	INTERGENIC
SBS	Chr2	12840828	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g21620
SBS	Chr2	3760275	C-T	HET	INTERGENIC
SBS	Chr3	15761086	G-A	HET	INTERGENIC
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr3	3039189	A-G	HET	INTERGENIC
SBS	Chr3	5683474	A-T	HET	INTRON
SBS	Chr3	9791623	C-T	HOMO	INTRON
SBS	Chr4	22841857	C-A	HET	INTERGENIC
SBS	Chr4	23205912	A-C	HOMO	INTERGENIC
SBS	Chr4	27415407	G-A	HOMO	INTERGENIC
SBS	Chr5	12804950	G-A	HOMO	INTERGENIC
SBS	Chr5	13380304	A-T	HOMO	INTRON
SBS	Chr5	18643766	C-T	HET	INTERGENIC
SBS	Chr5	19933504	A-T	HET	INTERGENIC
SBS	Chr5	24297705	C-T	HET	INTERGENIC
SBS	Chr6	25325367	G-A	HET	INTERGENIC
SBS	Chr6	5069510	A-G	HET	INTERGENIC
SBS	Chr7	1694018	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g04010
SBS	Chr7	26844200	G-A	HET	INTERGENIC
SBS	Chr7	8563563	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	8914091	A-C	HET	INTERGENIC
SBS	Chr8	24826593	A-T	HOMO	INTERGENIC
SBS	Chr8	3717483	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g06580
SBS	Chr9	10383447	A-G	HOMO	INTERGENIC
SBS	Chr9	3997712	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g07860

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	614939	615053	114	LOC_Os01g02120
Deletion	Chr6	2391194	2391196	2
Deletion	Chr9	4130896	4130897	1	LOC_Os09g08020
Deletion	Chr12	4785173	4785179	6
Deletion	Chr3	5204260	5204269	9	2
Deletion	Chr3	5983862	5983880	18	LOC_Os03g11550
Deletion	Chr5	6072765	6072766	1
Deletion	Chr6	6665371	6665373	2
Deletion	Chr7	6816026	6816035	9
Deletion	Chr7	6911659	6911665	6
Deletion	Chr10	7680564	7680566	2
Deletion	Chr4	8116440	8116441	1
Deletion	Chr1	8998673	8998691	18
Deletion	Chr12	9603238	9603248	10	LOC_Os12g16750
Deletion	Chr3	9743265	9743269	4
Deletion	Chr9	10383179	10383238	59
Deletion	Chr1	11412145	11412162	17	LOC_Os01g20110
Deletion	Chr8	11808772	11808775	3	LOC_Os08g19720
Deletion	Chr7	11862133	11862165	32
Deletion	Chr6	14029046	14029073	27
Deletion	Chr8	15234644	15234655	11
Deletion	Chr11	15646001	15679000	33000	5
Deletion	Chr3	17922323	17922330	7
Deletion	Chr9	18966903	18966916	13
Deletion	Chr4	19425335	19425339	4
Deletion	Chr5	20636861	20636874	13
Deletion	Chr4	21888030	21888040	10
Deletion	Chr5	21944336	21944352	16
Deletion	Chr7	23943580	23943592	12
Deletion	Chr4	28336442	28336447	5
Deletion	Chr7	28359990	28359998	8	LOC_Os07g47430
Deletion	Chr1	28486676	28486683	7	LOC_Os01g49529
Deletion	Chr4	31895323	31895324	1	LOC_Os04g53530
Deletion	Chr1	33024943	33024980	37
Deletion	Chr1	36080155	36080183	28

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	17838567	17838570	4
Insertion	Chr2	12353499	12353502	4
Insertion	Chr2	1417698	1417699	2	LOC_Os02g03480
Insertion	Chr3	381152	381157	6
Insertion	Chr4	16564311	16564332	22
Insertion	Chr4	32487617	32487618	2
Insertion	Chr4	7471318	7471318	1
Insertion	Chr7	12851170	12851171	2
Insertion	Chr7	3165265	3165266	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15645671	15900018	LOC_Os11g27170
Inversion	Chr11	15679006	15900034	LOC_Os11g27250

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2482047	Chr1	614953	2
Translocation	Chr12	11272894	Chr7	2280249	LOC_Os12g19381
Translocation	Chr12	18596792	Chr5	2015452
Translocation	Chr11	21145101	Chr8	26805614
Translocation	Chr4	27473358	Chr3	13639296

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