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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20409780	C-T	HET	INTERGENIC
SBS	Chr1	28963916	A-G	HET	INTERGENIC
SBS	Chr1	31904555	C-T	HOMO	INTERGENIC
SBS	Chr3	11390512	C-T	HET	INTERGENIC
SBS	Chr3	12279138	G-T	HET	INTRON
SBS	Chr3	16947756	T-G	HET	INTERGENIC
SBS	Chr3	22766773	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	2986719	G-A	HET	INTERGENIC
SBS	Chr4	5344535	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g09940
SBS	Chr4	6606811	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12040
SBS	Chr4	6606816	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	7301785	T-G	HET	UTR_3_PRIME
SBS	Chr4	7936760	A-T	HET	INTERGENIC
SBS	Chr4	17021915	T-C	HET	INTERGENIC
SBS	Chr5	9495058	G-A	HET	INTERGENIC
SBS	Chr5	16338120	C-G	HET	INTRON
SBS	Chr5	19126425	C-T	HET	INTRON
SBS	Chr5	19891682	T-C	HET	INTERGENIC
SBS	Chr5	29886601	T-A	HET	INTRON
SBS	Chr6	6170456	G-A	HET	INTERGENIC
SBS	Chr6	6170457	C-T	HET	INTERGENIC
SBS	Chr6	8038313	T-A	HET	INTERGENIC
SBS	Chr6	8209580	A-G	HET	INTERGENIC
SBS	Chr6	25405906	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42300
SBS	Chr6	25699489	C-A	HET	INTRON
SBS	Chr6	25967924	C-T	HET	UTR_3_PRIME
SBS	Chr6	25967925	G-T	HET	UTR_3_PRIME
SBS	Chr7	8579963	G-A	HOMO	INTERGENIC
SBS	Chr7	21921683	T-A	HOMO	INTERGENIC
SBS	Chr8	994107	C-T	HOMO	INTERGENIC
SBS	Chr8	21380124	T-C	HET	INTERGENIC
SBS	Chr9	4091276	C-T	HOMO	INTRON
SBS	Chr10	3961007	G-A	HOMO	INTERGENIC
SBS	Chr10	10050812	G-A	HET	INTRON
SBS	Chr10	11798578	A-T	HET	INTERGENIC
SBS	Chr10	14832856	A-G	HET	UTR_3_PRIME
SBS	Chr11	22767562	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g38440
SBS	Chr11	23936704	C-T	HOMO	INTERGENIC
SBS	Chr12	11715819	G-T	HET	INTERGENIC
SBS	Chr12	16938955	T-C	HOMO	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1116751	1117740	989	LOC_Os10g02800
Deletion	Chr6	1701001	1734000	33000	7
Deletion	Chr10	2521448	2521512	64
Deletion	Chr12	5584526	5584527	1
Deletion	Chr2	5757184	5757185	1
Deletion	Chr6	6283861	6283875	14
Deletion	Chr12	7481124	7481153	29
Deletion	Chr4	8941403	8941417	14
Deletion	Chr4	9721632	9721638	6
Deletion	Chr1	10883018	10883026	8
Deletion	Chr3	11419532	11419545	13	LOC_Os03g20200
Deletion	Chr10	11425880	11425883	3
Deletion	Chr2	15105890	15106706	816	LOC_Os02g25780
Deletion	Chr3	15200456	15200467	11
Deletion	Chr5	16048744	16048748	4
Deletion	Chr1	16271304	16271309	5
Deletion	Chr7	16512844	16512857	13
Deletion	Chr9	16648409	16648441	32
Deletion	Chr4	17039001	17188000	149000	24
Deletion	Chr10	18172390	18172406	16
Deletion	Chr11	18545080	18545092	12
Deletion	Chr10	19266859	19266860	1
Deletion	Chr2	19638411	19638418	7	LOC_Os02g33030
Deletion	Chr4	20390146	20390150	4
Deletion	Chr10	22416005	22416011	6
Deletion	Chr10	22561245	22561270	25
Deletion	Chr8	25494433	25494441	8	LOC_Os08g40270
Deletion	Chr5	26576629	26576630	1	LOC_Os05g45870
Deletion	Chr2	31877001	31908000	31000	4
Deletion	Chr2	33120557	33120770	213
Deletion	Chr1	34003292	34003293	1
Deletion	Chr1	40868227	40868248	21	LOC_Os01g70570

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	33894516	33894517	2
Insertion	Chr11	28281687	28281690	4
Insertion	Chr6	700093	700094	2
Insertion	Chr8	13657406	13657407	2
Insertion	Chr4	7225287	7225287	1
Insertion	Chr8	2285494	2285494	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14477351	17187524
Inversion	Chr11	20865287	28679972
Inversion	Chr5	28552648	28574917	2
Inversion	Chr5	28552661	28574915	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	1239290	Chr2	32366681	LOC_Os03g03034
Translocation	Chr8	12191392	Chr2	5893950	LOC_Os08g20300
Translocation	Chr10	18197430	Chr4	15932920	2
Translocation	Chr7	19203428	Chr4	17081217
Translocation	Chr4	33214193	Chr2	31908241	LOC_Os04g55790
Translocation	Chr4	33214194	Chr2	31877425	LOC_Os04g55790

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