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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10524050	C-A	HOMO	INTERGENIC
SBS	Chr1	11313473	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g19930
SBS	Chr1	20738081	C-G	HOMO	INTERGENIC
SBS	Chr1	29348305	G-A	HOMO	INTERGENIC
SBS	Chr1	3546018	G-T	HET	INTERGENIC
SBS	Chr1	42812911	G-A	HET	INTRON
SBS	Chr10	16858722	C-G	HET	INTERGENIC
SBS	Chr10	5020567	C-T	HET	INTRON
SBS	Chr10	5095032	A-G	HET	INTRON
SBS	Chr11	19906420	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	4579083	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g08610
SBS	Chr11	5492881	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g10140
SBS	Chr12	11040530	T-C	HET	INTERGENIC
SBS	Chr12	12105767	T-A	HET	INTRON
SBS	Chr12	14489385	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g25200
SBS	Chr2	10155341	T-C	HOMO	UTR_5_PRIME
SBS	Chr2	29333375	A-G	HOMO	INTERGENIC
SBS	Chr3	23374544	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g42050
SBS	Chr3	25002069	C-T	HET	UTR_3_PRIME
SBS	Chr3	3092144	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06160
SBS	Chr3	33330370	A-T	HOMO	INTRON
SBS	Chr3	4467224	C-T	HOMO	INTERGENIC
SBS	Chr4	33511067	G-A	HOMO	INTERGENIC
SBS	Chr4	33847085	G-C	HET	INTERGENIC
SBS	Chr4	9068292	C-G	HOMO	INTERGENIC
SBS	Chr5	11218508	G-A	HET	INTERGENIC
SBS	Chr5	15374966	G-A	HET	INTERGENIC
SBS	Chr5	24721102	C-A	HET	INTRON
SBS	Chr5	24721105	A-C	HET	INTRON
SBS	Chr6	13004498	G-A	HET	INTERGENIC
SBS	Chr7	15322413	C-T	HET	INTRON
SBS	Chr7	16536956	A-T	HOMO	INTERGENIC
SBS	Chr7	22328991	T-C	HET	INTERGENIC
SBS	Chr8	21307670	G-T	HET	INTRON
SBS	Chr8	4881368	G-T	HOMO	INTERGENIC
SBS	Chr8	6426513	C-A	HOMO	INTERGENIC
SBS	Chr8	6443438	G-T	HET	INTRON
SBS	Chr8	7565437	T-A	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2327247	2327258	11	LOC_Os02g04960
Deletion	Chr8	4195367	4195369	2
Deletion	Chr6	6212623	6212634	11
Deletion	Chr8	7349850	7349852	2
Deletion	Chr1	7906001	7916000	10000
Deletion	Chr5	7922403	7922405	2
Deletion	Chr2	10162399	10162403	4
Deletion	Chr7	10571429	10571434	5
Deletion	Chr5	13243713	13243726	13
Deletion	Chr7	15506662	15506677	15
Deletion	Chr10	15608523	15608524	1
Deletion	Chr5	15766429	15766463	34
Deletion	Chr10	20179281	20179292	11
Deletion	Chr8	21696697	21696714	17
Deletion	Chr2	22914338	22914442	104
Deletion	Chr5	24720888	24720889	1	LOC_Os05g42260
Deletion	Chr3	28103223	28103237	14
Deletion	Chr7	28169870	28169871	1
Deletion	Chr7	28606179	28606180	1
Deletion	Chr3	30852330	30852332	2

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23331772	23331817	46	LOC_Os01g41210
Insertion	Chr1	4807434	4807435	2
Insertion	Chr12	11007901	11007902	2
Insertion	Chr12	3603698	3603702	5
Insertion	Chr4	4124944	4125002	59	LOC_Os04g07760
Insertion	Chr5	10133374	10133375	2
Insertion	Chr5	7365322	7365323	2
Insertion	Chr6	24037839	24037842	4
Insertion	Chr8	11243534	11243535	2
Insertion	Chr8	26815767	26815768	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5785984	7318438
Inversion	Chr10	10438107	10543747
Inversion	Chr10	12886954	14239730	LOC_Os10g25030

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1384769	Chr2	7913909	2
Translocation	Chr12	4980276	Chr3	15238097
Translocation	Chr8	7485347	Chr7	12529689
Translocation	Chr11	12004224	Chr10	2305634
Translocation	Chr11	15905659	Chr4	22046396
Translocation	Chr11	27773718	Chr5	2205885

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