Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10703660	T-C	HET	INTERGENIC
SBS	Chr1	18148159	C-T	HET	INTERGENIC
SBS	Chr1	391446	A-T	HOMO	INTERGENIC
SBS	Chr10	9806866	G-A	HET	INTERGENIC
SBS	Chr11	17171096	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29610
SBS	Chr11	22441078	T-A	HOMO	INTERGENIC
SBS	Chr11	27323788	T-A	HET	UTR_3_PRIME
SBS	Chr11	3560011	A-G	HOMO	INTERGENIC
SBS	Chr12	14393286	G-T	HET	INTERGENIC
SBS	Chr12	18358642	G-T	HOMO	INTERGENIC
SBS	Chr12	8096039	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14240
SBS	Chr2	34599510	T-C	HOMO	INTRON
SBS	Chr3	18614958	G-A	HET	INTERGENIC
SBS	Chr3	22048871	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	22048872	G-T	HOMO	STOP_GAINED	LOC_Os03g39650
SBS	Chr3	22048873	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g39650
SBS	Chr3	30459625	C-T	HET	INTERGENIC
SBS	Chr4	11297100	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20240
SBS	Chr4	18730571	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g31300
SBS	Chr4	21242800	G-A	HET	INTERGENIC
SBS	Chr4	2769757	A-G	HET	INTERGENIC
SBS	Chr5	6591174	A-T	HOMO	INTRON
SBS	Chr5	9635884	A-T	HOMO	INTERGENIC
SBS	Chr7	11675297	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	22740669	A-T	HET	INTRON
SBS	Chr7	28706966	T-A	HET	INTERGENIC
SBS	Chr9	11499595	T-A	HET	INTRON
SBS	Chr9	14283456	C-T	HET	INTRON
SBS	Chr9	17926627	C-T	HET	INTERGENIC
SBS	Chr9	2992146	T-C	HOMO	INTERGENIC
SBS	Chr9	3701641	A-C	HOMO	INTERGENIC
SBS	Chr9	5204207	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g09660
SBS	Chr9	8629064	A-G	HET	SYNONYMOUS_CODING

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2264090	2264091	1	LOC_Os02g04900
Deletion	Chr12	3555671	3555688	17	LOC_Os12g07230
Deletion	Chr6	5619492	5619505	13
Deletion	Chr7	6852569	6852570	1	LOC_Os07g12230
Deletion	Chr11	11895446	11895459	13
Deletion	Chr1	12900664	12900670	6
Deletion	Chr1	13184021	13184022	1	LOC_Os01g23470
Deletion	Chr8	17824174	17824182	8
Deletion	Chr7	20261391	20261392	1
Deletion	Chr8	20625144	20625154	10	LOC_Os08g33160
Deletion	Chr10	21333117	21333118	1
Deletion	Chr11	23154425	23154429	4	LOC_Os11g38890
Deletion	Chr1	23793753	23793760	7
Deletion	Chr2	30149985	30149986	1	LOC_Os02g49332
Deletion	Chr3	34676540	34676549	9	LOC_Os03g61040

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	15316880	15316962	83
Insertion	Chr12	20922592	20922592	1
Insertion	Chr12	27134457	27134460	4
Insertion	Chr4	20701596	20701597	2
Insertion	Chr7	23010388	23010389	2
Insertion	Chr7	8045906	8045909	4
Insertion	Chr8	16866911	16866912	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5800284	6029182	2
Inversion	Chr11	13392964	13501993	LOC_Os11g23234
Inversion	Chr6	21424565	21543889	LOC_Os06g36650
Inversion	Chr6	21424584	21543892	LOC_Os06g36650
Inversion	Chr6	24537554	25097865

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5027381	Chr1	41499301
Translocation	Chr9	5810953	Chr8	10008769
Translocation	Chr4	6139716	Chr1	17190496	LOC_Os04g11230
Translocation	Chr8	12055502	Chr6	21198588	2
Translocation	Chr11	19870728	Chr5	27566059	LOC_Os11g33970
Translocation	Chr8	20995055	Chr7	11050051
Translocation	Chr12	25654701	Chr8	16333896
Translocation	Chr8	27043096	Chr7	18570752

Main menu