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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	288823	G-A	HOMO	INTRON
SBS	Chr1	18535320	A-G	HOMO	INTRON
SBS	Chr1	35933017	C-A	HET	INTERGENIC
SBS	Chr2	35433687	A-T	HET	UTR_3_PRIME
SBS	Chr3	9811880	C-A	HET	INTRON
SBS	Chr3	14869221	A-G	HET	INTERGENIC
SBS	Chr3	15510037	G-A	HET	INTERGENIC
SBS	Chr3	17384499	T-G	HET	INTRON
SBS	Chr3	22079660	G-A	HET	INTERGENIC
SBS	Chr4	1589023	A-G	HET	INTERGENIC
SBS	Chr4	7654368	G-A	HET	INTERGENIC
SBS	Chr4	15345080	G-A	HET	INTRON
SBS	Chr4	15345081	A-T	HET	INTRON
SBS	Chr5	6598011	A-G	HOMO	INTERGENIC
SBS	Chr5	11840210	G-A	HOMO	INTERGENIC
SBS	Chr5	19801285	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	26453390	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45640
SBS	Chr5	27144275	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46900
SBS	Chr6	14860784	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25370
SBS	Chr7	3568292	A-T	HOMO	INTRON
SBS	Chr7	7746761	T-C	HOMO	UTR_5_PRIME
SBS	Chr7	12739422	C-T	HOMO	INTERGENIC
SBS	Chr7	14085548	A-G	HOMO	INTRON
SBS	Chr8	10558556	G-A	HET	INTERGENIC
SBS	Chr8	17770375	C-A	HET	UTR_3_PRIME
SBS	Chr12	1551349	G-C	HOMO	INTERGENIC
SBS	Chr12	1762374	G-A	HOMO	INTERGENIC
SBS	Chr12	10667817	G-T	HET	INTERGENIC
SBS	Chr12	17123819	G-A	HET	INTERGENIC
SBS	Chr12	19142005	A-C	HET	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	86001	117000	31000	7
Deletion	Chr12	969072	969077	5
Deletion	Chr11	1641256	1947557	306301	56
Deletion	Chr3	4716929	4716930	1
Deletion	Chr3	7362046	7362058	12
Deletion	Chr12	9630495	9630496	1
Deletion	Chr4	10758001	10803000	45000	5
Deletion	Chr11	11195453	11195575	122
Deletion	Chr12	14312001	14460000	148000	26
Deletion	Chr3	15856646	15856650	4	LOC_Os03g27670
Deletion	Chr1	19010957	19010969	12
Deletion	Chr6	21416929	21416937	8
Deletion	Chr6	21880405	21880406	1
Deletion	Chr6	21962018	21962019	1
Deletion	Chr4	23079654	23079657	3	LOC_Os04g38810
Deletion	Chr11	23239508	23239509	1
Deletion	Chr6	23278045	23278059	14
Deletion	Chr6	25819054	25819055	1	LOC_Os06g42980
Deletion	Chr4	26428130	26428132	2
Deletion	Chr4	27215309	27215316	7
Deletion	Chr4	27502951	27502954	3
Deletion	Chr2	29580575	29580580	5
Deletion	Chr4	30353423	30353427	4	LOC_Os04g51230

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	9774417	9774417	1
Insertion	Chr5	7539812	7539812	1
Insertion	Chr6	2984989	2984989	1
Insertion	Chr5	28124716	28124717	2	LOC_Os05g49040
Insertion	Chr6	28300445	28300448	4
Insertion	Chr3	16732248	16732249	2
Insertion	Chr9	14985480	14985481	2
Insertion	Chr10	5461517	5461517	1
Insertion	Chr10	19725372	19725372	1
Insertion	Chr7	27802065	27802065	1
Insertion	Chr8	8657538	8657538	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21101878	21155279
Inversion	Chr9	21101890	21155300

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	83831	Chr2	3079942	LOC_Os08g01110
Translocation	Chr8	117136	Chr3	22510954	LOC_Os08g01180
Translocation	Chr8	117137	Chr4	10802995	LOC_Os08g01180
Translocation	Chr8	120818	Chr4	10758148	LOC_Os08g01180
Translocation	Chr11	1662714	Chr2	21538755	LOC_Os11g04104
Translocation	Chr12	10251652	Chr2	19206815
Translocation	Chr4	10802995	Chr3	22511201
Translocation	Chr11	11195454	Chr3	22327938	LOC_Os11g19450
Translocation	Chr12	11634625	Chr8	85566	LOC_Os12g19980
Translocation	Chr12	11634647	Chr1	23581241	2
Translocation	Chr8	16361308	Chr4	18302301

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