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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5751721	C-T	HET	INTERGENIC
SBS	Chr1	28880786	A-G	HOMO	INTERGENIC
SBS	Chr1	32885693	T-G	HOMO	INTERGENIC
SBS	Chr1	35304611	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61010
SBS	Chr1	36987994	G-T	HET	INTERGENIC
SBS	Chr1	42234087	A-G	HOMO	INTERGENIC
SBS	Chr2	12871789	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g21660
SBS	Chr2	24938926	A-T	HET	INTERGENIC
SBS	Chr2	24938927	G-T	HET	INTERGENIC
SBS	Chr2	29735443	C-T	HET	INTERGENIC
SBS	Chr3	9016469	G-A	HET	UTR_3_PRIME
SBS	Chr3	21701656	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39040
SBS	Chr3	31213502	A-T	HET	INTERGENIC
SBS	Chr3	35920497	T-C	HET	INTERGENIC
SBS	Chr4	1875386	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	3960797	C-A	HOMO	INTERGENIC
SBS	Chr4	17676636	G-A	HOMO	INTERGENIC
SBS	Chr4	19136404	C-G	HOMO	INTRON
SBS	Chr4	21112415	G-A	HET	INTERGENIC
SBS	Chr4	21244342	A-T	HET	INTRON
SBS	Chr4	29782101	C-T	HOMO	INTRON
SBS	Chr5	14204763	A-T	HOMO	INTRON
SBS	Chr6	25458855	G-T	HET	INTERGENIC
SBS	Chr7	9087528	G-A	HET	INTERGENIC
SBS	Chr8	18373669	G-T	HET	INTERGENIC
SBS	Chr9	5893905	G-T	HOMO	INTERGENIC
SBS	Chr9	5928356	A-G	HOMO	INTRON
SBS	Chr9	9237590	G-T	HOMO	INTERGENIC
SBS	Chr9	9237591	G-T	HOMO	INTERGENIC
SBS	Chr11	15766526	G-A	HET	INTERGENIC
SBS	Chr12	3268539	G-T	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	304411	304422	11	LOC_Os01g01600
Deletion	Chr7	360076	360077	1
Deletion	Chr1	1666513	1666517	4
Deletion	Chr11	3261618	3261625	7
Deletion	Chr1	6596705	6596716	11
Deletion	Chr11	9118822	9118823	1
Deletion	Chr9	9298628	9298655	27
Deletion	Chr6	11251633	11251634	1
Deletion	Chr8	11896252	11896256	4
Deletion	Chr10	14229612	14229622	10	LOC_Os10g26990
Deletion	Chr4	14883402	14883403	1
Deletion	Chr8	19515059	19515060	1
Deletion	Chr9	21816707	21816717	10
Deletion	Chr6	23828590	23828600	10
Deletion	Chr7	24446836	24446849	13
Deletion	Chr6	25913963	25914757	794
Deletion	Chr11	26792164	26792169	5	LOC_Os11g44330
Deletion	Chr6	28200380	28200392	12
Deletion	Chr1	32885698	32885702	4
Deletion	Chr4	33831436	33831447	11
Deletion	Chr3	34071802	34071803	1
Deletion	Chr3	35798951	35798954	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	776974	776976	3
Insertion	Chr10	12873142	12873143	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	813717	1713341	LOC_Os04g02320
Inversion	Chr4	1215451	1713251	LOC_Os04g02980
Inversion	Chr7	4694225	5603105

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	7047396	Chr1	36582409
Translocation	Chr10	15226596	Chr6	25913970
Translocation	Chr12	17840262	Chr11	13707754	LOC_Os11g24120
Translocation	Chr12	22237391	Chr1	13535802
Translocation	Chr11	28352153	Chr8	9930860

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