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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13396404	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23810
SBS	Chr1	14258265	T-G	HET	INTERGENIC
SBS	Chr1	16165140	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g28870
SBS	Chr1	16165142	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g28870
SBS	Chr1	19418803	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35070
SBS	Chr3	13752527	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24190
SBS	Chr3	27161284	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47820
SBS	Chr4	31808696	G-T	HET	INTERGENIC
SBS	Chr5	1378163	C-T	HET	STOP_GAINED	LOC_Os05g03360
SBS	Chr5	9553608	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g16780
SBS	Chr5	16154981	A-T	HOMO	INTERGENIC
SBS	Chr5	18380786	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	18380787	C-T	HOMO	STOP_GAINED	LOC_Os05g31570
SBS	Chr5	25870077	T-A	HOMO	INTERGENIC
SBS	Chr6	22532586	G-A	HET	INTRON
SBS	Chr7	4273956	A-G	HET	INTERGENIC
SBS	Chr7	4273958	C-G	HET	INTERGENIC
SBS	Chr7	17952028	A-G	HET	INTERGENIC
SBS	Chr7	20110813	A-T	HET	INTERGENIC
SBS	Chr7	28167603	A-G	HET	SYNONYMOUS_CODING
SBS	Chr8	5011929	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08655
SBS	Chr8	15488814	T-G	HOMO	INTERGENIC
SBS	Chr8	20914925	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33510
SBS	Chr8	23950530	C-T	HET	INTERGENIC
SBS	Chr9	4621560	A-G	HOMO	INTERGENIC
SBS	Chr9	5007943	T-C	HET	INTRON
SBS	Chr10	22721671	G-C	HET	INTERGENIC
SBS	Chr11	22918438	C-T	HET	INTERGENIC
SBS	Chr11	24923574	C-T	HET	INTERGENIC
SBS	Chr11	25005680	C-T	HET	UTR_3_PRIME
SBS	Chr12	8600264	A-G	HET	INTRON
SBS	Chr12	11445947	C-T	HET	INTERGENIC
SBS	Chr12	21524734	T-C	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	918885	918888	3
Deletion	Chr7	7341299	7341524	225
Deletion	Chr2	8582364	8582365	1
Deletion	Chr11	9030172	9030177	5
Deletion	Chr6	9735365	9735366	1	LOC_Os06g16810
Deletion	Chr7	16927049	16927055	6
Deletion	Chr7	16962107	16962108	1
Deletion	Chr6	17499979	17499982	3
Deletion	Chr8	21032874	21032889	15
Deletion	Chr7	21095157	21095163	6
Deletion	Chr12	22063382	22063388	6
Deletion	Chr1	22066001	22116000	50000	6
Deletion	Chr4	22738914	22740740	1826
Deletion	Chr2	23544024	23544025	1
Deletion	Chr11	28833662	28833663	1
Deletion	Chr2	30484808	30484811	3
Deletion	Chr1	42046681	42046685	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	26505874	26505875	2
Insertion	Chr2	8103302	8103305	4
Insertion	Chr11	19595026	19595027	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8151093	9188429	2
Inversion	Chr1	21547555	22001960	LOC_Os01g38359
Inversion	Chr1	21823922	22001936	LOC_Os01g38890
Inversion	Chr1	22014763	22585767
Inversion	Chr1	41565481	41774910	LOC_Os01g71740
Inversion	Chr1	41565564	41774636	LOC_Os01g71740

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4269481	Chr1	21884886	LOC_Os07g08340
Translocation	Chr7	4270192	Chr1	22014752	LOC_Os07g08340
Translocation	Chr10	19503141	Chr7	4163450
Translocation	Chr10	19503214	Chr7	4219012
Translocation	Chr9	19842088	Chr1	3432303	LOC_Os01g07280
Translocation	Chr12	23517505	Chr7	4270193	2
Translocation	Chr12	23517508	Chr7	4276754	LOC_Os12g38310
Translocation	Chr11	25637609	Chr7	4163382	LOC_Os11g42590
Translocation	Chr11	25638072	Chr10	18448165	2

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