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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17833819	G-T	HET	INTERGENIC
SBS	Chr1	20335370	C-T	HET	INTERGENIC
SBS	Chr10	14489598	C-A	HET	INTRON
SBS	Chr10	15616103	G-A	HET	UTR_3_PRIME
SBS	Chr10	16495696	C-G	HET	INTERGENIC
SBS	Chr11	11477660	G-A	HET	INTERGENIC
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr12	6739575	G-T	HOMO	INTERGENIC
SBS	Chr2	13249048	T-C	HET	INTERGENIC
SBS	Chr3	8485951	C-A	HET	INTERGENIC
SBS	Chr4	14523863	C-A	HET	INTERGENIC
SBS	Chr4	17425201	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29350
SBS	Chr4	18254351	A-T	HET	INTERGENIC
SBS	Chr4	18395006	A-G	HET	INTERGENIC
SBS	Chr4	32724098	T-C	HOMO	INTERGENIC
SBS	Chr5	26460353	G-A	HET	INTERGENIC
SBS	Chr5	28904469	C-T	HET	INTRON
SBS	Chr5	7350166	T-A	HET	INTRON
SBS	Chr5	7359933	C-T	HET	INTERGENIC
SBS	Chr5	7359936	G-T	HET	INTERGENIC
SBS	Chr6	16196322	A-T	HET	INTERGENIC
SBS	Chr6	17606301	A-T	HET	INTRON
SBS	Chr6	20631746	G-T	HET	INTERGENIC
SBS	Chr6	22866172	C-A	HET	INTRON
SBS	Chr6	24162690	G-T	HET	INTERGENIC
SBS	Chr7	11662844	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g20210
SBS	Chr7	11662845	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g20210
SBS	Chr8	18784827	G-T	HET	INTERGENIC
SBS	Chr9	14756658	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	5495450	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	908982	909105	123
Deletion	Chr11	3953705	3953873	168
Deletion	Chr5	4537404	4537415	11
Deletion	Chr9	6604072	6604082	10
Deletion	Chr5	7623001	7667000	44000	6
Deletion	Chr2	9161808	9161810	2
Deletion	Chr2	9163217	9163223	6
Deletion	Chr2	12851001	12885000	34000	5
Deletion	Chr9	14945465	14945471	6
Deletion	Chr10	15643872	15643882	10	LOC_Os10g30100
Deletion	Chr6	17567768	17567769	1
Deletion	Chr6	28226896	28226916	20	LOC_Os06g46480
Deletion	Chr1	28355204	28356399	1195	LOC_Os01g49320
Deletion	Chr5	28901337	28904508	3171
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960
Deletion	Chr3	35252982	35252988	6
Deletion	Chr3	36200213	36200219	6

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	18165630	18165634	5
Insertion	Chr11	2929209	2929210	2
Insertion	Chr3	7620255	7620256	2
Insertion	Chr4	108155	108156	2
Insertion	Chr5	16375533	16375534	2
Insertion	Chr7	26396949	26396950	2
Insertion	Chr9	15428300	15428301	2
Insertion	Chr9	20179787	20179794	8	LOC_Os09g34180

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6251812	6278874	LOC_Os05g11140
Inversion	Chr6	23678084	26401731	LOC_Os06g43840
Inversion	Chr6	23678124	26401801	LOC_Os06g43840

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	908984	Chr1	28356395	LOC_Os03g02480
Translocation	Chr5	2487537	Chr1	28210930	LOC_Os01g49080
Translocation	Chr10	2724260	Chr7	22206869
Translocation	Chr12	4277950	Chr6	8549234
Translocation	Chr2	9236355	Chr1	9625628	LOC_Os02g16240
Translocation	Chr12	15455663	Chr5	7666078
Translocation	Chr12	23183541	Chr6	23504962	LOC_Os12g37760
Translocation	Chr5	28901338	Chr1	28356475	LOC_Os05g50420
Translocation	Chr5	28901408	Chr3	909183	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr12	9269277	9269896	619

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