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Mutant Information

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5546175	G-A	HOMO	INTERGENIC
SBS	Chr10	11837623	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g22770
SBS	Chr10	18232992	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g34170
SBS	Chr10	21837285	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g40710
SBS	Chr10	22584173	T-C	HET	INTERGENIC
SBS	Chr10	6755881	T-A	HOMO	INTERGENIC
SBS	Chr11	17300626	T-G	HET	INTERGENIC
SBS	Chr12	10724456	A-G	HET	UTR_5_PRIME
SBS	Chr2	29674425	C-T	HOMO	INTERGENIC
SBS	Chr2	4415319	T-A	HOMO	INTERGENIC
SBS	Chr2	4415320	T-A	HOMO	INTERGENIC
SBS	Chr4	12676570	G-A	HET	INTERGENIC
SBS	Chr4	12690719	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22400
SBS	Chr4	6189206	G-A	HET	INTERGENIC
SBS	Chr5	13287929	T-C	HOMO	INTERGENIC
SBS	Chr5	23945120	G-C	HET	INTERGENIC
SBS	Chr6	11600305	G-A	HOMO	INTRON
SBS	Chr9	14879764	T-A	HOMO	INTERGENIC
SBS	Chr9	16133916	G-A	HET	INTERGENIC
SBS	Chr9	16160469	C-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	338162	338164	2
Deletion	Chr5	744432	744433	1
Deletion	Chr4	2814879	2839715	24836	2
Deletion	Chr5	3529982	3529987	5	LOC_Os05g06750
Deletion	Chr2	4007088	4007090	2
Deletion	Chr11	5875608	5875628	20
Deletion	Chr7	11346081	11346939	858	LOC_Os07g19170
Deletion	Chr8	12114301	12114302	1
Deletion	Chr8	12157198	12157205	7
Deletion	Chr6	12704650	12704653	3
Deletion	Chr11	14321893	14321894	1
Deletion	Chr9	15841206	15841211	5
Deletion	Chr9	16803765	16803770	5
Deletion	Chr2	19012549	19012561	12
Deletion	Chr12	20241001	20309000	68000	14
Deletion	Chr12	20407888	20407916	28
Deletion	Chr11	21680438	21680445	7
Deletion	Chr12	21844001	21933000	89000	9
Deletion	Chr12	24414956	24414957	1
Deletion	Chr6	29481651	29481653	2
Deletion	Chr4	34033813	34033815	2	LOC_Os04g57110
Deletion	Chr1	35187809	35187827	18	LOC_Os01g60860

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	9584101	9584103	3
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560
Insertion	Chr11	1623145	1623146	2
Insertion	Chr5	8801268	8801268	1
Insertion	Chr6	22079691	22079692	2
Insertion	Chr8	20425353	20425354	2
Insertion	Chr9	7069031	7069032	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11067946	11803124	2
Inversion	Chr12	11068017	11803510	2
Inversion	Chr1	13047289	13080939
Inversion	Chr1	13080946	14563539	LOC_Os01g25688
Inversion	Chr11	22233340	23638085

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4145644	Chr3	13137845	LOC_Os05g07710
Translocation	Chr12	5600342	Chr10	6728798
Translocation	Chr5	6127546	Chr3	25791675	2
Translocation	Chr11	13179950	Chr7	11346923
Translocation	Chr11	13179971	Chr7	11346083	LOC_Os07g19170
Translocation	Chr9	16188906	Chr4	16575570	2
Translocation	Chr8	22763438	Chr6	10540408	2
Translocation	Chr2	26974033	Chr1	17298209

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