Search Results

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	431308	T-A	HOMO	UTR_3_PRIME
SBS	Chr1	3916140	C-G	HET	INTERGENIC
SBS	Chr1	8313411	T-C	HET	INTERGENIC
SBS	Chr1	9989197	C-T	HOMO	INTERGENIC
SBS	Chr1	14551746	G-T	HET	INTRON
SBS	Chr2	3959736	T-A	HET	INTERGENIC
SBS	Chr2	6193169	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr2	23735786	G-A	HOMO	INTERGENIC
SBS	Chr3	8632244	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15650
SBS	Chr3	9239459	A-T	HET	INTERGENIC
SBS	Chr3	16221483	G-A	HET	INTRON
SBS	Chr4	13303416	T-A	HET	SYNONYMOUS_CODING
SBS	Chr4	20655023	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g34100
SBS	Chr4	31569228	G-A	HET	INTERGENIC
SBS	Chr5	1612621	G-A	HET	INTERGENIC
SBS	Chr5	5684523	C-A	HOMO	INTRON
SBS	Chr5	5684524	C-G	HOMO	INTRON
SBS	Chr6	17869150	A-G	HET	INTERGENIC
SBS	Chr6	21528490	C-A	HET	INTRON
SBS	Chr7	21432675	T-A	HOMO	INTERGENIC
SBS	Chr8	4275199	C-T	HET	INTERGENIC
SBS	Chr8	21571628	C-T	HET	INTRON
SBS	Chr9	4985353	T-A	HET	INTERGENIC
SBS	Chr9	10109409	G-A	HOMO	INTERGENIC
SBS	Chr9	13924717	T-G	HET	INTERGENIC
SBS	Chr10	12728388	A-T	HET	INTERGENIC
SBS	Chr11	14336585	C-T	HET	INTERGENIC
SBS	Chr11	21572308	G-A	HET	INTERGENIC
SBS	Chr11	21932573	A-T	HET	INTERGENIC
SBS	Chr12	14253922	A-G	HOMO	INTERGENIC
SBS	Chr12	20877032	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g34480
SBS	Chr12	22554722	C-T	HET	INTERGENIC
SBS	Chr12	22554723	T-C	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	617418	617845	427	LOC_Os12g02070
Deletion	Chr8	624214	624223	9
Deletion	Chr3	651940	651941	1
Deletion	Chr9	1325876	1325878	2
Deletion	Chr2	1369935	1369936	1
Deletion	Chr8	1808873	1808874	1
Deletion	Chr12	1844885	1844890	5
Deletion	Chr7	4139145	4139154	9
Deletion	Chr11	4236627	4276107	39480	7
Deletion	Chr5	4487726	4487730	4
Deletion	Chr2	4587044	4587051	7
Deletion	Chr5	5687224	5687225	1
Deletion	Chr5	5705949	5705958	9
Deletion	Chr5	5946657	5946674	17	LOC_Os05g10770
Deletion	Chr8	7430726	7430736	10
Deletion	Chr7	9470809	9470816	7
Deletion	Chr2	9940446	9940448	2
Deletion	Chr8	11605173	11605180	7
Deletion	Chr7	13900001	14230000	330000	55
Deletion	Chr7	14245001	14435000	190000	27
Deletion	Chr5	14742293	14742314	21	LOC_Os05g25380
Deletion	Chr4	19054702	19054707	5
Deletion	Chr11	19178318	19178329	11	LOC_Os11g32490
Deletion	Chr4	19760071	19760073	2
Deletion	Chr12	19893496	19893497	1
Deletion	Chr7	21432861	21432893	32
Deletion	Chr12	22620127	22620131	4
Deletion	Chr4	24120621	24120627	6
Deletion	Chr7	24153925	24153929	4
Deletion	Chr12	24321533	24321557	24
Deletion	Chr4	25581031	25581095	64	LOC_Os04g43230

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	15780243	15780244	2
Insertion	Chr3	12930154	12930169	16	LOC_Os03g22510
Insertion	Chr6	28120293	28120298	6
Insertion	Chr1	1551559	1551562	4
Insertion	Chr1	3341686	3341687	2
Insertion	Chr1	23798371	23798372	2
Insertion	Chr12	25900257	25900258	2
Insertion	Chr4	15304917	15304917	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1646266	1710059	2
Inversion	Chr2	2627645	3188143	LOC_Os02g06380

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3171095	Chr3	17139049	LOC_Os07g06530
Translocation	Chr4	7066715	Chr1	5284648	LOC_Os04g12770
Translocation	Chr12	7498376	Chr2	26973982
Translocation	Chr8	9661081	Chr5	4928416
Translocation	Chr9	19139513	Chr3	8314042
Translocation	Chr12	22926498	Chr9	5231515	2
Translocation	Chr11	24744934	Chr3	27528937	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr5	19798487	19811665	13178	2

Main menu