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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	241341	C-T	HOMO	INTERGENIC
SBS	Chr1	29344350	G-C	HET	INTERGENIC
SBS	Chr1	30934670	G-T	HET	STOP_GAINED	LOC_Os01g53810
SBS	Chr1	30934671	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53810
SBS	Chr10	5783411	T-A	HET	INTRON
SBS	Chr11	17538111	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g30170
SBS	Chr11	23287750	C-T	HET	INTERGENIC
SBS	Chr11	24247251	C-T	HET	INTERGENIC
SBS	Chr11	577918	C-A	HET	INTERGENIC
SBS	Chr12	16315406	G-A	HET	INTERGENIC
SBS	Chr2	11077561	T-C	HET	INTERGENIC
SBS	Chr2	16000187	T-C	HET	INTERGENIC
SBS	Chr2	31310634	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	487194	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	6763695	G-A	HOMO	INTERGENIC
SBS	Chr2	9996929	G-T	HOMO	INTRON
SBS	Chr3	18817260	A-G	HET	INTERGENIC
SBS	Chr3	20549523	A-T	HET	INTRON
SBS	Chr4	15514881	C-T	HET	INTERGENIC
SBS	Chr4	21215831	G-A	HET	UTR_3_PRIME
SBS	Chr5	21299737	G-T	HET	INTERGENIC
SBS	Chr5	21784523	C-T	HET	INTERGENIC
SBS	Chr5	24057352	A-C	HET	INTERGENIC
SBS	Chr5	4938222	T-C	HET	INTERGENIC
SBS	Chr5	9358372	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g16490
SBS	Chr6	11507766	G-A	HET	INTERGENIC
SBS	Chr6	22169286	A-T	HET	INTERGENIC
SBS	Chr6	8212931	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g14590
SBS	Chr8	5194750	G-A	HET	INTERGENIC
SBS	Chr8	8752881	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14560
SBS	Chr8	9753069	G-A	HET	INTRON
SBS	Chr9	5235240	C-A	HET	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2724001	2781000	57000	6
Deletion	Chr7	2807218	2807227	9	LOC_Os07g05840
Deletion	Chr12	5561001	5598000	37000	6
Deletion	Chr7	6424449	6424456	7
Deletion	Chr10	8954130	8954141	11
Deletion	Chr2	11554902	11554903	1
Deletion	Chr10	11939146	11939160	14
Deletion	Chr12	13487392	13487394	2	LOC_Os12g23754
Deletion	Chr9	14958223	14958235	12
Deletion	Chr9	18330635	18330653	18
Deletion	Chr9	19790871	19790877	6
Deletion	Chr8	20632066	20632072	6
Deletion	Chr6	21089331	21089336	5
Deletion	Chr6	21239398	21239407	9
Deletion	Chr6	24507328	24507329	1	LOC_Os06g41030
Deletion	Chr7	24721925	24721928	3	LOC_Os07g41250
Deletion	Chr8	27683322	27683328	6	LOC_Os08g43930
Deletion	Chr6	28454187	28454190	3
Deletion	Chr7	28727013	28747879	20866	4
Deletion	Chr4	28997824	28997828	4
Deletion	Chr3	29635276	29635288	12
Deletion	Chr2	30825789	30825790	1	LOC_Os02g50480
Deletion	Chr1	39535984	39535985	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	42459782	42459783	2
Insertion	Chr2	12864063	12864066	4
Insertion	Chr2	20545991	20545992	2
Insertion	Chr4	4266037	4266038	2
Insertion	Chr4	4664657	4664657	1
Insertion	Chr5	311092	311093	2	LOC_Os05g01520
Insertion	Chr8	9184146	9184148	3
Insertion	Chr9	13194256	13194256	1
Insertion	Chr9	7196896	7196897	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	149645	2494166	LOC_Os07g01250
Inversion	Chr12	8246555	8782149
Inversion	Chr12	8425013	8782144	LOC_Os12g14720
Inversion	Chr3	18927701	18987801	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	689428	Chr2	24817280	LOC_Os02g41450
Translocation	Chr9	1518271	Chr5	18390626	LOC_Os05g31590
Translocation	Chr9	6318970	Chr1	1281619
Translocation	Chr11	7190216	Chr1	14546653
Translocation	Chr8	8400857	Chr7	6388311	LOC_Os07g11580
Translocation	Chr8	12181098	Chr6	14299325
Translocation	Chr11	19804903	Chr3	23443050	LOC_Os11g33450
Translocation	Chr12	19969409	Chr11	17059952	2

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