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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13036624	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g23200
SBS	Chr10	21266827	T-C	HET	INTERGENIC
SBS	Chr11	10746558	C-T	HET	INTRON
SBS	Chr11	11642319	G-A	HOMO	STOP_GAINED	LOC_Os11g20150
SBS	Chr12	12731002	T-C	HET	INTERGENIC
SBS	Chr2	1003949	C-A	HET	INTERGENIC
SBS	Chr2	22766211	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g37710
SBS	Chr3	23123639	G-A	HOMO	INTERGENIC
SBS	Chr3	28043010	G-A	HOMO	INTERGENIC
SBS	Chr3	31296724	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g55030
SBS	Chr3	5754683	G-A	HET	INTERGENIC
SBS	Chr4	17367449	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29290
SBS	Chr5	3558115	A-G	HET	INTERGENIC
SBS	Chr6	21742393	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g36900
SBS	Chr6	25318233	C-A	HOMO	INTERGENIC
SBS	Chr7	14137054	A-G	HOMO	INTERGENIC
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr8	2234515	G-A	HET	INTERGENIC
SBS	Chr8	8039851	G-A	HET	STOP_GAINED	LOC_Os08g13520
SBS	Chr9	13076574	C-T	HET	INTERGENIC
SBS	Chr9	14311686	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	8724507	T-C	HOMO	SYNONYMOUS_CODING

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2712985	2713001	16
Deletion	Chr7	3144837	3144843	6
Deletion	Chr11	6653126	6653133	7
Deletion	Chr8	10824124	10824125	1
Deletion	Chr5	15234698	15234700	2
Deletion	Chr11	15578748	15578759	11
Deletion	Chr9	16508153	16508202	49
Deletion	Chr4	16617960	16617964	4	LOC_Os04g28130
Deletion	Chr6	17621025	17621026	1
Deletion	Chr6	17962385	17962393	8
Deletion	Chr11	19259008	19259025	17
Deletion	Chr10	22182358	22182359	1	LOC_Os10g41270
Deletion	Chr9	22553304	22553309	5
Deletion	Chr6	24990571	24990585	14
Deletion	Chr1	25098271	25098275	4
Deletion	Chr4	27560703	27560716	13
Deletion	Chr1	30475078	30475082	4	LOC_Os01g53020
Deletion	Chr4	31938328	31938346	18
Deletion	Chr4	32061042	32061053	11	LOC_Os04g53800
Deletion	Chr3	32293770	32293780	10
Deletion	Chr1	32557063	32557081	18
Deletion	Chr3	34968558	34968559	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	15041698	15041699	2
Insertion	Chr8	20085411	20085412	2
Insertion	Chr8	25703016	25703017	2	LOC_Os08g40610

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4469294	4657411	LOC_Os02g08390
Inversion	Chr5	25099424	25386202
Inversion	Chr5	25099439	25386211

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2994165	Chr4	20494482
Translocation	Chr10	6939410	Chr4	18040850
Translocation	Chr9	7639624	Chr4	14814359	LOC_Os04g25560
Translocation	Chr8	10047695	Chr5	17972264
Translocation	Chr7	24512745	Chr1	10950057	LOC_Os07g40950

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