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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17170657	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	27981589	A-G	HOMO	INTERGENIC
SBS	Chr1	35537305	T-C	HET	INTERGENIC
SBS	Chr1	6577898	C-G	HOMO	INTERGENIC
SBS	Chr10	22721786	G-T	HOMO	INTERGENIC
SBS	Chr10	3372207	C-T	HET	INTERGENIC
SBS	Chr10	9287344	T-A	HET	INTERGENIC
SBS	Chr11	11786701	A-C	HET	INTRON
SBS	Chr11	13752278	C-T	HET	INTERGENIC
SBS	Chr11	20620082	A-G	HET	INTERGENIC
SBS	Chr11	23995148	G-A	HET	INTERGENIC
SBS	Chr12	15788060	C-T	HET	INTERGENIC
SBS	Chr12	21426081	G-T	HOMO	INTERGENIC
SBS	Chr12	22272343	T-G	HOMO	STOP_GAINED	LOC_Os12g36380
SBS	Chr2	24660347	G-T	HOMO	INTERGENIC
SBS	Chr2	30370446	C-T	HET	INTERGENIC
SBS	Chr2	9256331	T-A	HET	INTERGENIC
SBS	Chr2	9256332	T-G	HET	INTERGENIC
SBS	Chr3	15463908	T-C	HET	INTERGENIC
SBS	Chr3	23457074	C-T	HOMO	INTRON
SBS	Chr3	30705752	A-T	HOMO	INTERGENIC
SBS	Chr4	15526245	G-A	HOMO	INTERGENIC
SBS	Chr4	9584821	G-A	HET	INTERGENIC
SBS	Chr5	11925810	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	15172617	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26090
SBS	Chr5	18572048	C-T	HET	INTERGENIC
SBS	Chr5	18572053	A-T	HET	INTERGENIC
SBS	Chr5	21360760	T-A	HET	INTRON
SBS	Chr5	3400591	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	27655259	G-T	HOMO	INTERGENIC
SBS	Chr7	14025333	T-A	HET	INTERGENIC
SBS	Chr7	18290247	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30900
SBS	Chr7	19055779	A-C	HET	INTRON
SBS	Chr8	15996787	C-G	HOMO	INTERGENIC
SBS	Chr8	19992492	C-T	HOMO	INTERGENIC
SBS	Chr8	25677846	C-T	HET	INTRON
SBS	Chr8	4216060	C-A	HET	INTERGENIC
SBS	Chr9	13147300	T-C	HET	INTERGENIC
SBS	Chr9	14528624	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g24430
SBS	Chr9	14528626	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g24430

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	716007	716021	14
Deletion	Chr9	1744322	1744323	1
Deletion	Chr2	2059555	2059557	2
Deletion	Chr2	2180194	2180216	22
Deletion	Chr2	3023551	3023552	1
Deletion	Chr2	3748290	3748291	1
Deletion	Chr2	8163789	8163791	2
Deletion	Chr2	9247015	9247030	15
Deletion	Chr11	10278640	10278645	5
Deletion	Chr1	10389108	10389113	5
Deletion	Chr1	10706553	10706571	18
Deletion	Chr11	13747133	13747142	9	LOC_Os11g24170
Deletion	Chr4	17203345	17203352	7	LOC_Os04g29030
Deletion	Chr12	17575954	17575955	1
Deletion	Chr2	18875418	18875433	15
Deletion	Chr5	19063329	19063335	6
Deletion	Chr5	21277670	21277672	2	LOC_Os05g35860
Deletion	Chr11	21795264	21795265	1
Deletion	Chr5	24373217	24373239	22
Deletion	Chr5	28077027	28077038	11
Deletion	Chr1	31855071	31855078	7

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	34064088	34064089	2
Insertion	Chr2	17866036	17866037	2
Insertion	Chr3	8934064	8934064	1
Insertion	Chr9	10327470	10327471	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2364797	23954049
Inversion	Chr9	6250182	6423269
Inversion	Chr1	11616534	12027328
Inversion	Chr9	13622673	13783841
Inversion	Chr12	23215988	23524448	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	60399	Chr2	8120310	LOC_Os02g14720
Translocation	Chr6	8650813	Chr4	8676809
Translocation	Chr2	10396555	Chr1	15263540
Translocation	Chr9	12257796	Chr1	3222415	LOC_Os01g06790
Translocation	Chr6	14457663	Chr4	8094911
Translocation	Chr9	18223699	Chr5	16159008	LOC_Os05g27740
Translocation	Chr9	20127285	Chr4	5191228	LOC_Os09g34100
Translocation	Chr9	20793648	Chr4	5192075
Translocation	Chr12	23524435	Chr9	20793659	LOC_Os12g38330

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