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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11331011	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	22845381	A-C	HET	INTERGENIC
SBS	Chr1	23057070	G-T	HET	INTRON
SBS	Chr1	23263183	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	26664747	G-A	HET	INTERGENIC
SBS	Chr1	4293748	A-G	HET	INTERGENIC
SBS	Chr11	21400801	A-G	HET	INTERGENIC
SBS	Chr11	28766332	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47630
SBS	Chr11	9046155	C-A	HET	INTERGENIC
SBS	Chr12	12932499	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g22900
SBS	Chr12	22365167	G-C	HOMO	INTRON
SBS	Chr12	22788234	C-G	HOMO	INTERGENIC
SBS	Chr12	2777324	G-A	HOMO	INTERGENIC
SBS	Chr2	6266318	T-A	HET	INTRON
SBS	Chr2	9965888	C-G	HET	INTERGENIC
SBS	Chr3	31941773	T-G	HET	INTERGENIC
SBS	Chr4	10910929	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	15542454	C-T	HET	INTERGENIC
SBS	Chr4	17334314	G-A	HET	INTRON
SBS	Chr4	23381239	G-A	HET	INTERGENIC
SBS	Chr4	28967421	C-T	HOMO	INTERGENIC
SBS	Chr4	4875277	A-C	HET	UTR_5_PRIME
SBS	Chr4	5580144	A-G	HET	INTERGENIC
SBS	Chr5	20835774	G-A	HET	INTRON
SBS	Chr5	23133274	G-A	HET	INTRON
SBS	Chr5	6987616	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g12200
SBS	Chr5	8976316	A-C	HET	INTRON
SBS	Chr6	1228421	T-A	HET	INTERGENIC
SBS	Chr6	1531158	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g03820
SBS	Chr6	1531159	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g03820
SBS	Chr6	29049402	T-C	HET	INTERGENIC
SBS	Chr7	1558613	G-A	HET	INTERGENIC
SBS	Chr7	21784728	T-A	HET	INTRON
SBS	Chr7	21784729	G-A	HET	INTRON
SBS	Chr7	21784730	T-A	HET	INTRON
SBS	Chr7	27081901	A-C	HET	INTRON
SBS	Chr7	28318798	G-T	HOMO	INTERGENIC
SBS	Chr8	11002016	G-A	HOMO	INTERGENIC
SBS	Chr8	17598255	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	9601011	G-A	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2263966	2263968	2
Deletion	Chr8	2818405	2818411	6
Deletion	Chr10	2851482	2851483	1
Deletion	Chr7	4708855	4708869	14	LOC_Os07g09020
Deletion	Chr1	5589558	5589560	2
Deletion	Chr4	5960078	5960081	3	LOC_Os04g10980
Deletion	Chr11	7845315	7845319	4	LOC_Os11g14090
Deletion	Chr11	7891333	7891335	2
Deletion	Chr7	8887283	8887287	4
Deletion	Chr5	11006717	11006722	5
Deletion	Chr10	11508156	11508487	331
Deletion	Chr11	15283402	15283414	12	LOC_Os11g26680
Deletion	Chr12	16069616	16069617	1
Deletion	Chr4	16717001	16776000	59000	7
Deletion	Chr4	16778001	17140000	362000	54
Deletion	Chr4	17151001	17158000	7000	2
Deletion	Chr12	18245132	18245135	3	LOC_Os12g30400
Deletion	Chr10	18411080	18411081	1
Deletion	Chr5	20054388	20054397	9
Deletion	Chr7	21809926	21809931	5
Deletion	Chr12	22385147	22385157	10
Deletion	Chr12	22510959	22512225	1266	LOC_Os12g36750

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	27699077	27699078	2
Insertion	Chr11	9940605	9940608	4
Insertion	Chr9	6713580	6713581	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9616400	14360029	LOC_Os01g16850
Inversion	Chr8	16161801	16266407	LOC_Os08g26740
Inversion	Chr1	16912125	16945212

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2906555	Chr5	26269524	LOC_Os10g05770
Translocation	Chr11	8558337	Chr4	16768817
Translocation	Chr8	14115861	Chr3	20826959	2
Translocation	Chr8	14117320	Chr3	20826893	2
Translocation	Chr11	25275701	Chr2	9161375

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