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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19445628	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35140
SBS	Chr1	39814577	C-A	HOMO	INTRON
SBS	Chr1	42411269	T-A	HET	INTERGENIC
SBS	Chr1	42411270	G-T	HET	INTERGENIC
SBS	Chr10	14668533	G-T	HET	INTERGENIC
SBS	Chr10	18145153	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	18389857	T-C	HET	INTRON
SBS	Chr10	8087046	A-C	HOMO	INTERGENIC
SBS	Chr11	21702546	A-T	HET	INTERGENIC
SBS	Chr11	21702547	A-T	HET	INTERGENIC
SBS	Chr11	24404914	A-G	HET	INTERGENIC
SBS	Chr11	25140634	G-T	HET	INTERGENIC
SBS	Chr12	11808381	G-C	HET	INTERGENIC
SBS	Chr12	13732618	C-G	HET	INTERGENIC
SBS	Chr12	14250875	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24830
SBS	Chr12	24620509	C-G	HET	INTRON
SBS	Chr2	26024606	T-A	HET	INTERGENIC
SBS	Chr2	3130222	C-A	HET	INTERGENIC
SBS	Chr3	32008662	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g56160
SBS	Chr4	13723867	G-A	HET	INTERGENIC
SBS	Chr4	1846109	T-C	HOMO	INTRON
SBS	Chr4	27192737	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g45910
SBS	Chr4	28633614	T-C	HET	INTERGENIC
SBS	Chr4	28709539	A-G	HOMO	INTERGENIC
SBS	Chr4	30646929	G-T	HOMO	INTERGENIC
SBS	Chr4	716267	A-T	HOMO	INTRON
SBS	Chr5	15068152	C-G	HET	INTERGENIC
SBS	Chr5	18563329	G-A	HET	INTERGENIC
SBS	Chr5	23543211	A-C	HET	INTERGENIC
SBS	Chr5	28172933	T-C	HET	INTERGENIC
SBS	Chr6	15071679	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25800

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2748963	2748970	7
Deletion	Chr8	2887201	2887203	2
Deletion	Chr10	5243052	5243063	11
Deletion	Chr11	10016764	10016770	6
Deletion	Chr5	10463542	10463550	8
Deletion	Chr12	11185708	11185716	8
Deletion	Chr10	14496816	14496817	1
Deletion	Chr5	16690297	16690310	13	LOC_Os05g28500
Deletion	Chr9	17525993	17525994	1
Deletion	Chr7	18988974	18988979	5
Deletion	Chr7	19772731	19772733	2	LOC_Os07g33110
Deletion	Chr11	21702745	21702748	3
Deletion	Chr8	22458757	22458758	1
Deletion	Chr7	23887481	23887485	4
Deletion	Chr11	25500715	25500717	2
Deletion	Chr2	29797655	29797685	30

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	10529818	10529825	8
Insertion	Chr3	23186067	23186067	1
Insertion	Chr7	19027147	19027148	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9048505	9091069	LOC_Os12g15950
Inversion	Chr12	14989465	21429642	2
Inversion	Chr12	14989482	21429604	LOC_Os12g25840

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2724268	Chr1	13710389
Translocation	Chr9	8108956	Chr2	17586902

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