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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14077513	G-A	HOMO	INTERGENIC
SBS	Chr1	16990159	C-T	HOMO	INTRON
SBS	Chr1	1820568	T-G	HET	INTRON
SBS	Chr1	21101315	T-C	HOMO	INTERGENIC
SBS	Chr1	21101317	T-A	HOMO	INTERGENIC
SBS	Chr1	21839639	G-A	HOMO	INTRON
SBS	Chr10	12818060	G-T	HOMO	INTRON
SBS	Chr11	18628094	G-A	HET	INTERGENIC
SBS	Chr11	21510258	T-G	HOMO	INTRON
SBS	Chr12	13081729	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	18892097	T-C	HET	INTRON
SBS	Chr12	788290	C-A	HET	INTERGENIC
SBS	Chr2	16105405	G-C	HOMO	INTERGENIC
SBS	Chr2	33942037	C-T	HOMO	UTR_5_PRIME
SBS	Chr3	17018348	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g29864
SBS	Chr3	22749109	T-C	HET	INTERGENIC
SBS	Chr3	27799123	A-G	HOMO	INTERGENIC
SBS	Chr4	15928215	C-G	HET	INTERGENIC
SBS	Chr4	33382681	T-C	HET	INTERGENIC
SBS	Chr4	6148617	C-T	HOMO	INTERGENIC
SBS	Chr5	12230387	C-T	HET	INTERGENIC
SBS	Chr5	15507713	G-T	HET	INTERGENIC
SBS	Chr5	6013034	C-A	HET	INTERGENIC
SBS	Chr5	8942192	A-T	HET	INTERGENIC
SBS	Chr5	8942193	A-T	HET	INTERGENIC
SBS	Chr5	9371318	C-A	HET	INTERGENIC
SBS	Chr6	13547676	C-T	HET	INTERGENIC
SBS	Chr6	25566024	G-A	HET	INTERGENIC
SBS	Chr7	19474228	C-T	HOMO	UTR_3_PRIME
SBS	Chr7	19474229	C-T	HOMO	UTR_3_PRIME
SBS	Chr7	4370126	T-A	HET	INTERGENIC
SBS	Chr8	21623966	A-G	HET	INTERGENIC
SBS	Chr8	2720390	T-C	HET	INTERGENIC
SBS	Chr8	4011892	G-A	HOMO	INTRON
SBS	Chr8	4923119	C-T	HET	INTRON
SBS	Chr9	13520400	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	17522761	C-G	HET	INTERGENIC
SBS	Chr9	4237917	C-T	HOMO	INTRON
SBS	Chr9	8624376	G-A	HOMO	INTRON

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3756372	3756375	3
Deletion	Chr8	4190294	4190312	18
Deletion	Chr8	4327519	4327528	9
Deletion	Chr9	6128623	6128626	3	LOC_Os09g11030
Deletion	Chr7	6614100	6614107	7
Deletion	Chr7	9416440	9416456	16
Deletion	Chr7	9672179	9672182	3
Deletion	Chr6	15486001	15770000	284000	48
Deletion	Chr9	15560931	15560936	5
Deletion	Chr5	15644260	15644261	1	LOC_Os05g26940
Deletion	Chr1	15655610	15655611	1
Deletion	Chr6	17461376	17461384	8
Deletion	Chr3	20594401	20594405	4	LOC_Os03g37170
Deletion	Chr10	21285156	21285163	7
Deletion	Chr8	21747083	21747092	9
Deletion	Chr12	22882580	22882593	13	LOC_Os12g37290
Deletion	Chr3	23849678	23849699	21
Deletion	Chr1	24141738	24141747	9
Deletion	Chr3	24997854	24997857	3	LOC_Os03g44420
Deletion	Chr4	25223891	25223895	4
Deletion	Chr1	28355176	28355180	4	LOC_Os01g49320
Deletion	Chr4	28740806	28740837	31
Deletion	Chr4	31018927	31018929	2
Deletion	Chr3	31336151	31336153	2
Deletion	Chr3	36096695	36096696	1
Deletion	Chr1	37178402	37178404	2	LOC_Os01g64010
Deletion	Chr1	39743649	39743651	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2713653	2713654	2
Insertion	Chr1	33477026	33477031	6
Insertion	Chr11	21510261	21510261	1
Insertion	Chr11	22561874	22561906	33	LOC_Os11g38030
Insertion	Chr2	24235268	24235278	11
Insertion	Chr4	28175908	28175911	4
Insertion	Chr7	5284335	5284337	3

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	629933	Chr4	18817429
Translocation	Chr10	10307224	Chr3	32459731
Translocation	Chr6	20933188	Chr3	25789846	LOC_Os06g35880

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