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| Mutant Information |
|---|
| Mutant Name | FN932-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN932-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14498341 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g25590 |
| SBS | Chr1 | 1538128 | G-A | HET | INTRON | |
| SBS | Chr10 | 15468601 | C-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 2746550 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr12 | 264676 | G-A | HET | INTRON | |
| SBS | Chr2 | 26304188 | T-G | HET | INTERGENIC | |
| SBS | Chr2 | 8221942 | C-T | HOMO | INTRON | |
| SBS | Chr4 | 23624265 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 27898804 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 3515261 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 11313286 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 26324460 | T-A | HET | INTRON | |
| SBS | Chr5 | 6214190 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 8664270 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 24960846 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 19044128 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 19120849 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 19156138 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 7020621 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 10846740 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g17730 |
| SBS | Chr9 | 17940606 | C-T | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 3329586 | 3329588 | 2 | |
| Deletion | Chr9 | 4349164 | 4349165 | 1 | |
| Deletion | Chr12 | 7509254 | 7509437 | 183 | |
| Deletion | Chr10 | 7663519 | 7663536 | 17 | |
| Deletion | Chr7 | 8494193 | 8494253 | 60 | |
| Deletion | Chr12 | 8563936 | 8563947 | 11 | |
| Deletion | Chr5 | 8782533 | 8782540 | 7 | LOC_Os05g15520 |
| Deletion | Chr12 | 10677099 | 10677100 | 1 | LOC_Os12g18460 |
| Deletion | Chr6 | 12263842 | 12263843 | 1 | |
| Deletion | Chr5 | 18706226 | 18706251 | 25 | |
| Deletion | Chr12 | 19555914 | 19555918 | 4 | LOC_Os12g32420 |
| Deletion | Chr4 | 19786001 | 19817000 | 31000 | 3 |
| Deletion | Chr1 | 23240001 | 23403000 | 163000 | 32 |
| Deletion | Chr7 | 24649340 | 24649344 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 2034300 | 2034300 | 1 | |
| Insertion | Chr11 | 22223380 | 22223383 | 4 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 19785750 | 20157366 | |
| Inversion | Chr4 | 19817050 | 20157373 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 10931109 | Chr2 | 12871989 | 2 |
| Translocation | Chr4 | 10931110 | Chr2 | 12871990 | 2 |