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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28463737	T-C	HET	INTERGENIC
SBS	Chr1	42773147	T-A	HET	INTERGENIC
SBS	Chr2	6932660	G-T	HOMO	INTERGENIC
SBS	Chr2	7669450	G-A	HET	INTERGENIC
SBS	Chr2	23893405	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	23893406	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g39590
SBS	Chr3	180865	T-C	HET	INTERGENIC
SBS	Chr3	5024961	G-A	HET	INTERGENIC
SBS	Chr3	23173314	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	27779917	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g48750
SBS	Chr4	149923	G-A	HET	INTERGENIC
SBS	Chr4	10086870	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18244
SBS	Chr4	16160763	A-G	HET	INTRON
SBS	Chr5	10229119	T-C	HET	INTERGENIC
SBS	Chr5	15960416	G-A	HET	INTERGENIC
SBS	Chr5	18724150	C-G	HET	INTRON
SBS	Chr5	22744155	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g38760
SBS	Chr5	23206183	T-C	HET	INTRON
SBS	Chr5	26343482	G-C	HET	INTERGENIC
SBS	Chr5	29093298	A-G	HOMO	INTERGENIC
SBS	Chr6	3717452	G-A	HET	INTERGENIC
SBS	Chr6	12797715	C-A	HOMO	STOP_GAINED	LOC_Os06g22060
SBS	Chr6	14273911	G-C	HOMO	INTRON
SBS	Chr6	17899238	G-T	HOMO	INTERGENIC
SBS	Chr6	22087969	C-T	HET	INTERGENIC
SBS	Chr7	17248309	T-G	HET	INTERGENIC
SBS	Chr7	20190143	C-A	HET	INTERGENIC
SBS	Chr8	5820529	G-A	HOMO	INTERGENIC
SBS	Chr8	6958791	C-A	HET	INTERGENIC
SBS	Chr8	17113442	A-C	HOMO	INTRON
SBS	Chr8	25820486	A-G	HOMO	INTRON
SBS	Chr9	2629915	C-T	HOMO	INTERGENIC
SBS	Chr9	15572200	G-A	HET	INTERGENIC
SBS	Chr10	12080360	G-A	HET	INTERGENIC
SBS	Chr11	9536299	C-A	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	659540	659542	2
Deletion	Chr7	993576	994368	792	LOC_Os07g02730
Deletion	Chr8	2607364	2607365	1
Deletion	Chr8	3302936	3302946	10
Deletion	Chr2	7188001	7204000	16000	2
Deletion	Chr2	7568264	7584839	16575	3
Deletion	Chr5	8292464	8292466	2
Deletion	Chr1	10016673	10016674	1
Deletion	Chr1	10369573	10369631	58
Deletion	Chr4	12404917	12404931	14
Deletion	Chr2	12695257	12697974	2717
Deletion	Chr1	16069119	16069123	4
Deletion	Chr4	17717308	17717311	3
Deletion	Chr5	18728419	18761578	33159	6
Deletion	Chr11	21064606	21064623	17
Deletion	Chr11	21518397	21518398	1
Deletion	Chr3	21706066	21706090	24
Deletion	Chr3	22246659	22246660	1
Deletion	Chr5	22834668	22834721	53
Deletion	Chr5	24922087	24922088	1	LOC_Os05g42448
Deletion	Chr5	24959001	25055000	96000	18
Deletion	Chr3	28183930	28183935	5
Deletion	Chr3	28663891	28663892	1	LOC_Os03g50290
Deletion	Chr1	33419785	33419786	1	LOC_Os01g57780

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	2306962	2306973	12
Insertion	Chr6	23644970	23644990	21
Insertion	Chr1	3253467	3253467	1
Insertion	Chr12	24700868	24700868	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3071508	4545754	2
Inversion	Chr3	3684353	3895402	2
Inversion	Chr2	6213777	7702982
Inversion	Chr2	7204316	7905462	LOC_Os02g13480
Inversion	Chr2	7215506	12697974	LOC_Os02g13500
Inversion	Chr2	7215520	12695261	LOC_Os02g13500
Inversion	Chr5	18728420	18877658
Inversion	Chr4	20047186	20060232

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	473794	Chr1	24174134
Translocation	Chr10	1823325	Chr1	34016451
Translocation	Chr11	16435523	Chr5	18740007	2

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