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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24548810	G-T	HET	INTERGENIC
SBS	Chr1	24548811	C-T	HET	INTERGENIC
SBS	Chr1	34457327	T-G	HET	INTERGENIC
SBS	Chr12	26001934	T-A	HET	INTERGENIC
SBS	Chr2	1721395	C-A	HOMO	INTERGENIC
SBS	Chr2	21589998	G-A	HET	INTERGENIC
SBS	Chr2	30743260	T-A	HET	INTRON
SBS	Chr2	33549525	C-T	HET	INTRON
SBS	Chr2	33549527	G-A	HET	INTRON
SBS	Chr3	22680046	T-C	HOMO	INTERGENIC
SBS	Chr4	13564858	G-A	HET	INTERGENIC
SBS	Chr4	18238859	A-G	HET	INTERGENIC
SBS	Chr4	28111223	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	3758520	A-T	HET	INTRON
SBS	Chr5	9536354	G-C	HOMO	INTERGENIC
SBS	Chr6	14671230	C-A	HET	INTERGENIC
SBS	Chr6	20639543	G-A	HOMO	UTR_5_PRIME
SBS	Chr6	25334967	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr6	27886826	G-C	HET	INTERGENIC
SBS	Chr8	7460399	G-A	HET	INTERGENIC
SBS	Chr9	10096981	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16480
SBS	Chr9	13549130	C-A	HET	INTERGENIC
SBS	Chr9	1677537	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03400
SBS	Chr9	17923109	A-T	HOMO	INTRON
SBS	Chr9	9918032	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	180977	180978	1
Deletion	Chr6	656290	673414	17124	4
Deletion	Chr3	2146001	2209000	63000	6
Deletion	Chr6	8261380	8261382	2
Deletion	Chr6	9274461	9274467	6
Deletion	Chr6	9568174	9568175	1
Deletion	Chr2	9772701	9772705	4
Deletion	Chr9	9859001	9889000	30000	5
Deletion	Chr1	12009758	12009762	4
Deletion	Chr4	12398034	12398035	1	LOC_Os04g21890
Deletion	Chr9	14357560	14357582	22
Deletion	Chr9	14374561	14374571	10
Deletion	Chr6	15492192	15492213	21
Deletion	Chr2	16463128	16463144	16
Deletion	Chr10	21452131	21452145	14
Deletion	Chr6	22189233	22189263	30
Deletion	Chr6	22262829	22262830	1
Deletion	Chr12	22271237	22271242	5
Deletion	Chr1	40025430	40025432	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	30218057	30218057	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3527230	5332534	LOC_Os08g09200
Inversion	Chr9	9858991	10113066	LOC_Os09g16160
Inversion	Chr9	9889094	10113696

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	666024	Chr3	2208826
Translocation	Chr6	673306	Chr3	2145871	LOC_Os03g04600
Translocation	Chr7	2320037	Chr3	2207135
Translocation	Chr9	10113073	Chr7	14376488
Translocation	Chr7	14376685	Chr3	2207490
Translocation	Chr7	15874534	Chr3	24262054	LOC_Os03g43490
Translocation	Chr7	15874536	Chr3	24261022

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr6	666023	673402	7379	LOC_Os06g02190

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