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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24136788	T-A	HOMO	INTERGENIC
SBS	Chr10	1080963	C-T	HOMO	INTERGENIC
SBS	Chr10	9436100	C-A	HET	INTERGENIC
SBS	Chr11	12915662	C-G	HET	INTERGENIC
SBS	Chr11	1398493	A-G	HET	INTERGENIC
SBS	Chr12	426311	G-A	HOMO	INTERGENIC
SBS	Chr2	13390668	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g22420
SBS	Chr2	8211530	C-A	HET	UTR_5_PRIME
SBS	Chr3	1209684	G-T	HET	INTERGENIC
SBS	Chr3	12565063	C-A	HET	INTERGENIC
SBS	Chr3	22000595	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39610
SBS	Chr3	22192313	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39920
SBS	Chr3	34878037	G-A	HET	INTERGENIC
SBS	Chr3	9661447	A-T	HET	INTERGENIC
SBS	Chr4	13945706	T-A	HOMO	INTERGENIC
SBS	Chr4	30802861	T-A	HOMO	INTRON
SBS	Chr4	6282150	G-C	HET	INTRON
SBS	Chr5	1965199	A-G	HOMO	INTERGENIC
SBS	Chr5	22385432	T-A	HET	INTRON
SBS	Chr5	28505821	G-A	HET	INTRON
SBS	Chr5	5230699	T-G	HET	INTERGENIC
SBS	Chr6	14052923	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g24050
SBS	Chr7	2205640	G-A	HET	INTERGENIC
SBS	Chr7	28418906	G-A	HOMO	INTERGENIC
SBS	Chr8	26551817	G-A	HOMO	INTERGENIC
SBS	Chr8	6377666	C-A	HOMO	INTERGENIC
SBS	Chr8	9690750	C-G	HOMO	INTERGENIC
SBS	Chr9	12275003	A-G	HET	INTERGENIC
SBS	Chr9	18724580	T-A	HET	INTERGENIC
SBS	Chr9	8394016	G-C	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2474429	2474430	1
Deletion	Chr6	2574158	2574166	8
Deletion	Chr4	7106681	7379425	272744	39
Deletion	Chr2	7487025	7487175	150
Deletion	Chr2	8187744	8187754	10
Deletion	Chr2	8499111	8499117	6
Deletion	Chr1	9202461	9202465	4
Deletion	Chr1	9972626	9972672	46
Deletion	Chr1	11328793	11328804	11
Deletion	Chr4	13502642	13502652	10
Deletion	Chr10	16066567	16066573	6
Deletion	Chr7	16410843	16410850	7
Deletion	Chr9	17039929	17039943	14
Deletion	Chr12	20060176	20060180	4
Deletion	Chr3	20763652	20763653	1
Deletion	Chr10	21663587	21663596	9
Deletion	Chr12	22506103	22506108	5
Deletion	Chr5	23418089	23418093	4	LOC_Os05g39840
Deletion	Chr1	23570249	23570259	10
Deletion	Chr3	23730810	23730823	13
Deletion	Chr3	23735116	23735117	1
Deletion	Chr7	26461583	26461589	6
Deletion	Chr5	29432514	29432515	1
Deletion	Chr5	29444789	29444834	45
Deletion	Chr2	35006265	35006284	19

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	21702977	21702982	6
Insertion	Chr3	24762381	24762381	1
Insertion	Chr4	31920391	31920392	2
Insertion	Chr7	5268745	5268746	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	20609280	21127841	LOC_Os01g37770

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr10	5024481	Chr3	31077467
Translocation	Chr12	13345323	Chr7	7972140
Translocation	Chr5	18271675	Chr4	28907052

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