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| Mutant Information |
|---|
| Mutant Name | FN938-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN938-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23929454 | T-C | HOMO | INTRON | |
| SBS | Chr1 | 597165 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 14633628 | G-T | HOMO | INTRON | |
| SBS | Chr12 | 17945266 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 18164626 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 22220436 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 2322249 | C-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 24021823 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 25620974 | G-T | HET | INTRON | |
| SBS | Chr12 | 27263093 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 27263096 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 26819488 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 30112908 | A-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 33951899 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 15577074 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 19037267 | C-G | HET | INTRON | |
| SBS | Chr3 | 30185341 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 2128907 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 27002639 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 29062950 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 4992319 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 6532588 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g11800 |
| SBS | Chr7 | 9592662 | G-A | HOMO | INTRON | |
| SBS | Chr9 | 19454169 | G-A | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 5301688 | 5301689 | 1 | |
| Deletion | Chr1 | 5755678 | 5755679 | 1 | |
| Deletion | Chr7 | 6532582 | 6532583 | 1 | LOC_Os07g11800 |
| Deletion | Chr9 | 7890768 | 7890774 | 6 | |
| Deletion | Chr9 | 8033087 | 8033090 | 3 | |
| Deletion | Chr1 | 10879317 | 10879319 | 2 | |
| Deletion | Chr9 | 11988497 | 11988505 | 8 | LOC_Os09g20010 |
| Deletion | Chr1 | 13795734 | 13795742 | 8 | LOC_Os01g24470 |
| Deletion | Chr10 | 16285517 | 16285518 | 1 | |
| Deletion | Chr10 | 17002424 | 17002425 | 1 | |
| Deletion | Chr8 | 18599652 | 18599660 | 8 | LOC_Os08g30260 |
| Deletion | Chr11 | 19322324 | 19322326 | 2 | |
| Deletion | Chr7 | 22506089 | 22506099 | 10 | |
| Deletion | Chr12 | 24305916 | 24305927 | 11 | |
| Deletion | Chr1 | 24375045 | 24375050 | 5 | |
| Deletion | Chr1 | 25232235 | 25232248 | 13 | LOC_Os01g44040 |
| Deletion | Chr8 | 27009781 | 27009789 | 8 | |
| Deletion | Chr6 | 28792214 | 28792220 | 6 | |
| Deletion | Chr3 | 29559265 | 29559273 | 8 | LOC_Os03g51640 |
| Deletion | Chr3 | 30720980 | 30720997 | 17 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 22887303 | 22887303 | 1 | |
| Insertion | Chr4 | 1954460 | 1954461 | 2 | |
| Insertion | Chr5 | 6514541 | 6514541 | 1 | |
| Insertion | Chr9 | 12831214 | 12831215 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 10082942 | 10133372 | LOC_Os03g18070 |
| Inversion | Chr1 | 22294712 | 23929514 | LOC_Os01g42234 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 28717932 | Chr2 | 6171094 |