Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN940-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN940-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17055536 | C-T | HET | STOP_GAINED | LOC_Os01g31190 |
| SBS | Chr1 | 2123198 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 22511530 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 26325855 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 26606164 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g46710 |
| SBS | Chr1 | 31866162 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 18694206 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 5407845 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr10 | 9339336 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 15344337 | A-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 17252590 | G-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 21409926 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 27030580 | T-G | HET | INTRON | |
| SBS | Chr11 | 5707336 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 9805705 | T-G | HOMO | INTRON | |
| SBS | Chr12 | 1603066 | G-A | HOMO | INTRON | |
| SBS | Chr12 | 8260057 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 25969445 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 8619138 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 30725922 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 27603456 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 25080659 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 28184119 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 28184120 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 21958585 | C-G | HET | INTERGENIC | |
| SBS | Chr8 | 27943503 | A-T | HOMO | INTRON | |
| SBS | Chr8 | 8847429 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 7179798 | G-A | HOMO | INTERGENIC |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 3104469 | 3104470 | 1 | |
| Deletion | Chr6 | 3776905 | 3776911 | 6 | |
| Deletion | Chr2 | 5505018 | 5505019 | 1 | LOC_Os02g10480 |
| Deletion | Chr11 | 5820510 | 5820535 | 25 | |
| Deletion | Chr6 | 6228535 | 6228536 | 1 | |
| Deletion | Chr9 | 6279329 | 6279330 | 1 | |
| Deletion | Chr10 | 9285439 | 9285455 | 16 | |
| Deletion | Chr6 | 10915673 | 10915680 | 7 | |
| Deletion | Chr6 | 12790145 | 12790148 | 3 | |
| Deletion | Chr9 | 13411825 | 13411826 | 1 | |
| Deletion | Chr2 | 14151475 | 14151476 | 1 | |
| Deletion | Chr9 | 14155554 | 14155555 | 1 | |
| Deletion | Chr3 | 14944242 | 14944243 | 1 | |
| Deletion | Chr11 | 15503464 | 15503465 | 1 | |
| Deletion | Chr6 | 16331917 | 16331985 | 68 | |
| Deletion | Chr8 | 17026897 | 17026900 | 3 | LOC_Os08g27940 |
| Deletion | Chr9 | 18351664 | 18351672 | 8 | |
| Deletion | Chr4 | 24814634 | 24814637 | 3 | |
| Deletion | Chr5 | 25351719 | 25351720 | 1 | |
| Deletion | Chr1 | 26426148 | 26426150 | 2 | |
| Deletion | Chr1 | 27046892 | 27046897 | 5 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 17035109 | 17035113 | 5 | LOC_Os10g32520 |
| Insertion | Chr2 | 11058041 | 11058041 | 1 | |
| Insertion | Chr2 | 6955845 | 6955845 | 1 | |
| Insertion | Chr3 | 23671316 | 23671319 | 4 | |
| Insertion | Chr3 | 27861179 | 27861180 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 20786946 | 20985759 | LOC_Os10g39000 |
| Inversion | Chr7 | 26937468 | 27966115 | LOC_Os07g46790 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 4141742 | Chr2 | 17320667 | LOC_Os03g08110 |
| Translocation | Chr12 | 13388448 | Chr3 | 34497849 | |
| Translocation | Chr7 | 24517700 | Chr5 | 21736375 | LOC_Os07g40974 |