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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28959188	G-T	HET	INTERGENIC
SBS	Chr1	29474288	A-G	HOMO	INTERGENIC
SBS	Chr10	13241432	A-C	HET	INTERGENIC
SBS	Chr10	16024173	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	18124939	C-T	HOMO	INTERGENIC
SBS	Chr11	18693052	T-A	HET	INTRON
SBS	Chr11	23757903	T-A	HET	INTERGENIC
SBS	Chr11	24790388	G-A	HET	INTERGENIC
SBS	Chr12	10114273	A-G	HOMO	INTERGENIC
SBS	Chr12	10547529	G-A	HOMO	INTERGENIC
SBS	Chr12	1720970	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	22637637	C-T	HET	INTRON
SBS	Chr12	23512677	C-T	HET	INTRON
SBS	Chr2	27283146	C-T	HOMO	INTERGENIC
SBS	Chr2	5110046	C-T	HET	INTERGENIC
SBS	Chr3	34105201	T-C	HOMO	INTERGENIC
SBS	Chr4	31180642	T-A	HET	INTRON
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	27200736	T-C	HOMO	INTERGENIC
SBS	Chr5	29511934	T-A	HOMO	UTR_5_PRIME
SBS	Chr5	29511936	G-A	HOMO	UTR_5_PRIME
SBS	Chr5	5747247	G-A	HET	INTERGENIC
SBS	Chr5	8241039	C-T	HET	INTERGENIC
SBS	Chr6	30497465	T-A	HET	INTRON
SBS	Chr6	6635393	C-T	HET	INTERGENIC
SBS	Chr7	19377178	A-T	HOMO	INTERGENIC
SBS	Chr7	2022858	A-G	HET	INTERGENIC
SBS	Chr7	9189255	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	9189257	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g15820
SBS	Chr7	9189259	C-A	HOMO	START_LOST	LOC_Os07g15820
SBS	Chr8	18323858	A-C	HOMO	INTRON
SBS	Chr8	23097504	C-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1873551	1873555	4
Deletion	Chr12	5334289	5334296	7
Deletion	Chr1	11005933	11005938	5	LOC_Os01g19450
Deletion	Chr1	12264720	12264721	1
Deletion	Chr5	14255029	14255036	7	LOC_Os05g24654
Deletion	Chr10	14664502	14664504	2
Deletion	Chr5	15822849	15822850	1
Deletion	Chr12	16728177	16728178	1
Deletion	Chr8	17924301	17924323	22	LOC_Os08g29230
Deletion	Chr11	18015001	18097000	82000	15
Deletion	Chr11	18692087	18692959	872	LOC_Os11g31820
Deletion	Chr2	19810522	19810525	3	LOC_Os02g33340
Deletion	Chr8	20234879	20234920	41
Deletion	Chr11	21156959	21156960	1	LOC_Os11g36000
Deletion	Chr12	21298864	21298879	15
Deletion	Chr10	21949048	21949077	29
Deletion	Chr5	22324440	22324445	5
Deletion	Chr9	22738001	22794000	56000	13
Deletion	Chr1	23105445	23105456	11	LOC_Os01g40860
Deletion	Chr12	24207515	24207519	4
Deletion	Chr12	24345001	24399000	54000	6
Deletion	Chr6	24732189	24732190	1
Deletion	Chr2	28491816	28491847	31
Deletion	Chr4	29562444	29562445	1
Deletion	Chr3	35032123	35032125	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	27382397	27382397	1
Insertion	Chr12	19403926	19403927	2
Insertion	Chr12	23551114	23551115	2
Insertion	Chr2	5449446	5449448	3
Insertion	Chr6	4492630	4492632	3
Insertion	Chr7	6098389	6098389	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8386399	8433304	LOC_Os08g14090
Inversion	Chr1	9342267	9438197	LOC_Os01g16450
Inversion	Chr12	24344522	24506439	LOC_Os12g39690
Inversion	Chr12	24399015	24506441	2
Inversion	Chr1	29464634	31772844
Inversion	Chr1	30528628	31772844	LOC_Os01g53130

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	8432143	Chr5	5868718	LOC_Os08g14090
Translocation	Chr8	8433273	Chr5	5868715	LOC_Os08g14090
Translocation	Chr12	12485824	Chr1	29464161
Translocation	Chr8	14295491	Chr1	2949201	LOC_Os08g23620

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