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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18892457	G-A	HOMO	INTERGENIC
SBS	Chr1	24739687	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g43280
SBS	Chr1	37019426	A-T	HET	INTERGENIC
SBS	Chr1	3905569	T-A	HET	SYNONYMOUS_CODING
SBS	Chr10	13585047	C-T	HOMO	INTRON
SBS	Chr10	5810742	G-T	HET	INTERGENIC
SBS	Chr11	12641080	C-T	HOMO	INTERGENIC
SBS	Chr11	19901100	C-T	HOMO	INTERGENIC
SBS	Chr12	12860592	G-T	HET	INTERGENIC
SBS	Chr12	12860593	G-T	HET	INTERGENIC
SBS	Chr12	3133510	T-C	HET	INTERGENIC
SBS	Chr12	4505540	T-C	HOMO	INTERGENIC
SBS	Chr3	10901432	T-G	HET	INTERGENIC
SBS	Chr3	14795365	A-G	HOMO	INTRON
SBS	Chr3	28183380	A-C	HET	INTRON
SBS	Chr4	10674894	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19210
SBS	Chr4	16940965	A-G	HOMO	INTERGENIC
SBS	Chr5	9506932	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16720
SBS	Chr6	17859006	G-A	HOMO	INTERGENIC
SBS	Chr7	13736544	G-T	HET	INTERGENIC
SBS	Chr7	17207359	T-C	HET	INTRON
SBS	Chr7	9381750	A-G	HET	INTERGENIC
SBS	Chr9	1848647	C-G	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	734001	792000	58000	12
Deletion	Chr9	1816001	1844000	28000	4
Deletion	Chr4	2029095	2029110	15
Deletion	Chr7	2125728	2125738	10
Deletion	Chr11	4005225	4005249	24
Deletion	Chr3	6233244	6233248	4	LOC_Os03g11900
Deletion	Chr12	7515177	7515183	6
Deletion	Chr7	7667136	7667137	1
Deletion	Chr6	7719574	7719576	2
Deletion	Chr8	8130054	8130056	2
Deletion	Chr1	10398956	10398963	7
Deletion	Chr1	11927990	11927994	4
Deletion	Chr6	24738679	24738681	2
Deletion	Chr7	26131557	26131562	5
Deletion	Chr8	26440550	26440552	2
Deletion	Chr2	29476416	29476417	1
Deletion	Chr1	30254001	30334000	80000	11
Deletion	Chr4	34540182	34546462	6280	2
Deletion	Chr2	34712362	34712368	6
Deletion	Chr2	35505950	35505951	1	LOC_Os02g57980

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	2937606	2937606	1
Insertion	Chr2	35176583	35176583	1
Insertion	Chr3	23400584	23400584	1
Insertion	Chr5	169904	169909	6
Insertion	Chr9	4781773	4781774	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1506840	10328813

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2564206	Chr6	8708932	2
Translocation	Chr8	2566502	Chr6	8708928	LOC_Os06g15340
Translocation	Chr7	19449228	Chr1	37074601
Translocation	Chr6	26040334	Chr5	8931136
Translocation	Chr6	26040448	Chr5	8931130

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