Search Results

Mutant Information

Mutant Name	FN944-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN944-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	HOMO	INTRON
SBS	Chr1	21428496	C-G	HOMO	INTRON
SBS	Chr2	9857271	C-A	HET	INTERGENIC
SBS	Chr2	30853872	G-A	HET	INTERGENIC
SBS	Chr3	1427059	T-A	HET	INTERGENIC
SBS	Chr3	2061415	G-A	HET	INTRON
SBS	Chr3	7490323	T-C	HET	INTERGENIC
SBS	Chr3	19633535	G-A	HOMO	INTERGENIC
SBS	Chr4	2903866	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05680
SBS	Chr4	23321486	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39220
SBS	Chr4	27778745	G-T	HOMO	INTERGENIC
SBS	Chr4	28888829	C-T	HET	INTERGENIC
SBS	Chr4	31933833	G-C	HET	INTERGENIC
SBS	Chr5	4745176	G-C	HET	INTERGENIC
SBS	Chr5	8471419	A-T	HET	INTERGENIC
SBS	Chr5	8748798	G-A	HET	INTERGENIC
SBS	Chr5	15305393	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	26551596	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g45830
SBS	Chr5	26551599	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g45830
SBS	Chr5	28568831	A-G	HOMO	INTERGENIC
SBS	Chr6	4031901	A-G	HET	INTERGENIC
SBS	Chr6	7262426	C-T	HET	INTRON
SBS	Chr6	7797539	G-C	HET	INTERGENIC
SBS	Chr6	14757476	T-C	HET	INTRON
SBS	Chr6	22429462	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g37880
SBS	Chr6	23457760	C-A	HET	INTERGENIC
SBS	Chr6	28304037	G-A	HOMO	INTERGENIC
SBS	Chr7	5116478	A-T	HET	INTERGENIC
SBS	Chr7	7359318	T-A	HET	INTRON
SBS	Chr7	18795258	C-T	HET	INTERGENIC
SBS	Chr7	21634829	G-T	HET	INTRON
SBS	Chr8	5191726	G-A	HOMO	INTERGENIC
SBS	Chr8	12062938	C-T	HET	INTERGENIC
SBS	Chr8	17444619	C-T	HET	INTERGENIC
SBS	Chr8	18876461	A-G	HET	UTR_3_PRIME
SBS	Chr8	26317666	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	26317667	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g41690
SBS	Chr9	3146406	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06634
SBS	Chr9	11952027	G-A	HET	INTRON
SBS	Chr9	12168854	T-A	HET	INTRON
SBS	Chr9	13518675	T-A	HET	INTERGENIC
SBS	Chr9	21410884	G-A	HET	INTERGENIC
SBS	Chr9	22829906	C-T	HET	INTRON
SBS	Chr10	4694088	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08660
SBS	Chr10	6843410	C-T	HOMO	INTERGENIC
SBS	Chr11	16434662	A-T	HOMO	INTERGENIC
SBS	Chr11	26175560	A-G	HET	INTERGENIC
SBS	Chr11	26659917	G-T	HET	INTERGENIC
SBS	Chr12	2924420	A-T	HOMO	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1060925	1060931	6
Deletion	Chr3	2047321	2047334	13
Deletion	Chr4	2449492	2449496	4	LOC_Os04g05040
Deletion	Chr7	4419621	4419622	1
Deletion	Chr5	4548679	4548683	4
Deletion	Chr10	5913728	5913729	1
Deletion	Chr8	6721561	6721566	5
Deletion	Chr6	6877001	7080000	203000	32
Deletion	Chr9	8621178	8621179	1
Deletion	Chr1	13156811	13156836	25	LOC_Os01g23420
Deletion	Chr1	13178001	13737000	559000	86
Deletion	Chr11	16433089	16433091	2
Deletion	Chr11	17768221	17768223	2
Deletion	Chr2	21757365	21768239	10874	LOC_Os02g36140
Deletion	Chr3	30618001	30659000	41000	6
Deletion	Chr1	43147255	43147274	19

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	22426877	22426880	4
Insertion	Chr3	12034205	12034206	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4994767	6246998	2
Inversion	Chr9	5369400	6246991	LOC_Os09g11250
Inversion	Chr6	7080688	7254147	LOC_Os06g12940
Inversion	Chr6	14766565	14804901
Inversion	Chr2	26898894	28763917	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	921638	Chr4	24323741	LOC_Os04g40980
Translocation	Chr6	921641	Chr4	24312952	LOC_Os04g40970
Translocation	Chr4	5659821	Chr1	13177720	LOC_Os04g10420
Translocation	Chr6	6876781	Chr4	21607908
Translocation	Chr6	7254162	Chr4	21455527	LOC_Os04g35280
Translocation	Chr6	13816624	Chr5	24173771	LOC_Os06g23670
Translocation	Chr6	13820887	Chr4	5667604
Translocation	Chr11	23447838	Chr4	32134042	LOC_Os04g53920
Translocation	Chr5	24173723	Chr4	5663931	LOC_Os04g10420

Main menu

You are here

Search Results