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| Mutant Information |
|---|
| Mutant Name | FN945-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN945-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15325056 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 33084256 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 35183447 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 6375739 | A-C | HOMO | INTRON | |
| SBS | Chr10 | 9846072 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 17678344 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 25506492 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 7994472 | A-G | HET | INTERGENIC | |
| SBS | Chr12 | 13943095 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 13943104 | T-G | HET | INTERGENIC | |
| SBS | Chr12 | 17947895 | C-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 24350245 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 24951212 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 4527616 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 2201767 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 22210103 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 30790531 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 35431914 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 12317573 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 19598759 | G-A | HET | INTRON | |
| SBS | Chr4 | 26614223 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 28273530 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g47640 |
| SBS | Chr4 | 28273531 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 10592453 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 15656114 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 19419525 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 28875343 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 3797610 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g07580 |
| SBS | Chr8 | 16580515 | A-T | HET | INTERGENIC |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 5058174 | 5058180 | 6 | |
| Deletion | Chr7 | 7212756 | 7212760 | 4 | |
| Deletion | Chr7 | 7303770 | 7303773 | 3 | |
| Deletion | Chr1 | 9759385 | 9759397 | 12 | |
| Deletion | Chr7 | 12830953 | 12830962 | 9 | |
| Deletion | Chr2 | 14226190 | 14226197 | 7 | LOC_Os02g24550 |
| Deletion | Chr1 | 17780572 | 17780582 | 10 | |
| Deletion | Chr9 | 20950285 | 20950286 | 1 | |
| Deletion | Chr4 | 23266345 | 23269104 | 2759 | |
| Deletion | Chr1 | 23717040 | 23717046 | 6 | |
| Deletion | Chr12 | 24665162 | 24665166 | 4 | |
| Deletion | Chr2 | 34482002 | 34482005 | 3 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 24576638 | 24576640 | 3 | |
| Insertion | Chr2 | 32845837 | 32845838 | 2 | |
| Insertion | Chr9 | 17576538 | 17576538 | 1 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2003607 | Chr4 | 23180331 | LOC_Os04g39030 |
| Translocation | Chr11 | 4847812 | Chr7 | 13502663 | |
| Translocation | Chr12 | 13386894 | Chr10 | 15370831 | LOC_Os10g29570 |
| Translocation | Chr7 | 21033264 | Chr5 | 26268341 |