Search Results
| Mutant Information |
|---|
| Mutant Name | FN946-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN946-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19412255 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 32176920 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 25642724 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 27694968 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 9988340 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 11020994 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 27980307 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 27090773 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 5278448 | A-G | HET | INTRON | |
| SBS | Chr7 | 18968460 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g31900 |
| SBS | Chr7 | 18968461 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g31900 |
| SBS | Chr7 | 20110385 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 21095607 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 22005486 | C-T | HET | INTRON | |
| SBS | Chr8 | 28293605 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g45070 |
| SBS | Chr9 | 11445329 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 21245651 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr10 | 21195983 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 21195984 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 7604826 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 13489648 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 24159887 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 25388743 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 18797395 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 21241401 | A-G | HET | INTRON |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 5142122 | 5142125 | 3 | |
| Deletion | Chr11 | 7552970 | 7564945 | 11975 | 2 |
| Deletion | Chr5 | 8587793 | 8587794 | 1 | LOC_Os05g15140 |
| Deletion | Chr1 | 13223862 | 13223863 | 1 | |
| Deletion | Chr3 | 14737001 | 14745000 | 8000 | 2 |
| Deletion | Chr12 | 17987361 | 17987364 | 3 | |
| Deletion | Chr7 | 18236075 | 18236081 | 6 | |
| Deletion | Chr4 | 18356302 | 18356312 | 10 | LOC_Os04g30700 |
| Deletion | Chr10 | 19400955 | 19400963 | 8 | |
| Deletion | Chr9 | 20002384 | 20002412 | 28 | |
| Deletion | Chr11 | 24126001 | 24158000 | 32000 | 3 |
| Deletion | Chr11 | 28854551 | 28854557 | 6 | LOC_Os11g47840 |
| Deletion | Chr4 | 33440001 | 33489000 | 49000 | 2 |
| Deletion | Chr1 | 37498473 | 37498483 | 10 | LOC_Os01g64610 |
No Insertion
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 14737222 | 15456934 | 2 |
| Inversion | Chr3 | 14745583 | 15456941 | LOC_Os03g27003 |
| Inversion | Chr11 | 23409434 | 24157765 | LOC_Os11g39320 |
| Inversion | Chr11 | 23676152 | 23932682 | LOC_Os11g39730 |
| Inversion | Chr4 | 32777661 | 32965824 | 2 |
| Inversion | Chr4 | 32779300 | 32965836 | LOC_Os04g55420 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 7552975 | Chr2 | 32995373 | |
| Translocation | Chr12 | 13372057 | Chr10 | 16479651 | LOC_Os12g23590 |
| Translocation | Chr9 | 15062124 | Chr4 | 29266147 | |
| Translocation | Chr8 | 20162339 | Chr6 | 3416821 | LOC_Os06g07130 |
| Translocation | Chr5 | 24827974 | Chr2 | 1006265 | |
| Translocation | Chr5 | 24828375 | Chr2 | 1006267 |