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Mutant Information |
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Mutant Name | FN947-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN947-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 35
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 16137366 | A-T | HOMO | INTRON | |
SBS | Chr1 | 16776313 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 28566540 | A-T | HOMO | INTERGENIC | |
SBS | Chr1 | 28812272 | G-T | HOMO | INTERGENIC | |
SBS | Chr1 | 28812273 | C-T | HOMO | INTERGENIC | |
SBS | Chr1 | 36381026 | G-A | HET | INTRON | |
SBS | Chr1 | 36381030 | T-A | HET | INTRON | |
SBS | Chr1 | 38884373 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 7214526 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g13080 |
SBS | Chr4 | 10792584 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr5 | 2829783 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 18637828 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 18795069 | C-A | HET | INTERGENIC | |
SBS | Chr5 | 23913273 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 23913274 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 12863567 | G-A | HET | INTRON | |
SBS | Chr6 | 14848830 | G-T | HOMO | INTERGENIC | |
SBS | Chr6 | 28029673 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 29958464 | T-C | HET | INTRON | |
SBS | Chr7 | 13133062 | G-A | HET | INTRON | |
SBS | Chr7 | 14026266 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 6848962 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 2913816 | G-A | HOMO | INTERGENIC | |
SBS | Chr9 | 8355705 | C-T | HET | INTERGENIC | |
SBS | Chr9 | 20324667 | G-T | HOMO | INTRON | |
SBS | Chr10 | 5486005 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 6971262 | G-A | HET | INTRON | |
SBS | Chr10 | 11641682 | A-T | HET | INTERGENIC | |
SBS | Chr10 | 21463149 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g40080 |
SBS | Chr11 | 9263198 | T-C | HET | INTERGENIC | |
SBS | Chr11 | 24882670 | C-A | HET | INTRON | |
SBS | Chr12 | 7555684 | T-C | HET | INTERGENIC | |
SBS | Chr12 | 7916419 | C-T | HET | INTRON | |
SBS | Chr12 | 8954890 | G-T | HOMO | INTRON | |
SBS | Chr12 | 19509480 | G-T | HET | INTRON |
Deletions: 10
No Insertion
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 5173376 | 5226767 | LOC_Os08g08890 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 1631193 | Chr2 | 30991346 | LOC_Os12g03940 |
Translocation | Chr8 | 10125733 | Chr6 | 18090406 | 2 |