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| Mutant Information |
|---|
| Mutant Name | FN950-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN950-S Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 46
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24132775 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 31079865 | T-A | HOMO | INTRON | |
| SBS | Chr1 | 40270292 | A-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 4474512 | A-G | HOMO | INTRON | |
| SBS | Chr1 | 5807579 | A-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 5898633 | G-A | HET | STOP_GAINED | LOC_Os10g10680 |
| SBS | Chr10 | 5902679 | A-T | HET | INTRON | |
| SBS | Chr11 | 21563045 | T-C | HET | INTRON | |
| SBS | Chr11 | 22290016 | G-A | HET | INTRON | |
| SBS | Chr12 | 10520260 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 10874167 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 12991760 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g22980 |
| SBS | Chr12 | 13458078 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 16871098 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 18103452 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 19321995 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 23898456 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 7539645 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g13450 |
| SBS | Chr2 | 31322144 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 25210600 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 31283260 | T-G | HOMO | INTRON | |
| SBS | Chr3 | 708464 | G-C | HET | UTR_3_PRIME | |
| SBS | Chr3 | 7892089 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 7892090 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 12529939 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g22110 |
| SBS | Chr4 | 30851457 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 34093170 | C-T | HET | INTRON | |
| SBS | Chr4 | 34288034 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 5711000 | A-G | HET | INTERGENIC | |
| SBS | Chr5 | 10922712 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 1450580 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 19879457 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27266794 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 7697982 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 8138703 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 17367756 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 18070645 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 24006581 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g40330 |
| SBS | Chr6 | 29890806 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 9451021 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 10033835 | A-G | HET | INTRON | |
| SBS | Chr8 | 12491538 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g20800 |
| SBS | Chr8 | 13628815 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g22650 |
| SBS | Chr8 | 22890936 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g36330 |
| SBS | Chr9 | 14379538 | C-T | HOMO | INTRON | |
| SBS | Chr9 | 15647965 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g26030 |
Deletions: 5
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 19344536 | 19344537 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 12298415 | 12588130 | LOC_Os09g20910 |
| Inversion | Chr8 | 22611857 | 22825645 | |
| Inversion | Chr8 | 23200138 | 23235093 | LOC_Os08g36790 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 12587296 | Chr8 | 22288938 | LOC_Os09g20910 |
| Translocation | Chr9 | 12588124 | Chr8 | 22288939 | LOC_Os09g20910 |
| Translocation | Chr6 | 21017965 | Chr3 | 34576981 | |
| Translocation | Chr6 | 21018396 | Chr3 | 34534339 |