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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5128174	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g09870
SBS	Chr1	10869289	C-T	HET	INTERGENIC
SBS	Chr1	28275682	G-A	HOMO	INTERGENIC
SBS	Chr1	28275683	G-A	HOMO	INTERGENIC
SBS	Chr1	28275684	G-A	HOMO	INTERGENIC
SBS	Chr1	35697998	A-G	HET	INTERGENIC
SBS	Chr1	41638733	A-T	HET	INTERGENIC
SBS	Chr1	41638735	A-T	HET	INTERGENIC
SBS	Chr2	1655020	G-A	HET	INTRON
SBS	Chr3	9782554	C-A	HOMO	UTR_5_PRIME
SBS	Chr3	14153067	A-C	HET	INTRON
SBS	Chr3	34252902	T-G	HET	INTERGENIC
SBS	Chr4	5074540	G-A	HET	INTRON
SBS	Chr5	3129505	C-T	HOMO	INTERGENIC
SBS	Chr5	14962092	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g25720
SBS	Chr5	18451745	T-C	HOMO	UTR_3_PRIME
SBS	Chr5	22478078	G-A	HET	INTERGENIC
SBS	Chr5	24270323	C-A	HET	INTERGENIC
SBS	Chr6	313007	C-T	HET	INTRON
SBS	Chr6	14930447	C-T	HET	INTRON
SBS	Chr6	15291312	T-A	HET	SYNONYMOUS_CODING
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	20565593	G-A	HET	INTERGENIC
SBS	Chr6	21038668	T-C	HET	INTERGENIC
SBS	Chr6	27574525	T-A	HET	INTERGENIC
SBS	Chr8	1399065	T-C	HET	INTERGENIC
SBS	Chr8	7230979	T-A	HET	INTERGENIC
SBS	Chr10	1174267	A-T	HET	INTERGENIC
SBS	Chr10	1174268	A-T	HET	INTERGENIC
SBS	Chr10	1174269	A-T	HET	INTERGENIC
SBS	Chr10	6580917	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11860
SBS	Chr11	14183016	G-A	HOMO	INTERGENIC
SBS	Chr11	20919997	G-A	HET	STOP_GAINED	LOC_Os11g35680
SBS	Chr12	5001062	T-C	HET	INTERGENIC
SBS	Chr12	23931523	C-A	HET	UTR_5_PRIME
SBS	Chr12	26365987	C-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1603058	1603077	19	LOC_Os12g03880
Deletion	Chr9	2167305	2167307	2
Deletion	Chr1	2867943	2867981	38
Deletion	Chr12	3504405	3504414	9
Deletion	Chr4	5684770	5684773	3	LOC_Os04g10450
Deletion	Chr5	7426102	7426105	3
Deletion	Chr5	7777402	7777410	8
Deletion	Chr4	13297601	13297606	5	LOC_Os04g23300
Deletion	Chr8	13393281	13393282	1
Deletion	Chr2	16069336	16069340	4
Deletion	Chr7	26110009	26110249	240
Deletion	Chr1	27392251	27392260	9
Deletion	Chr1	29744831	29744837	6
Deletion	Chr1	36173453	36173455	2
Deletion	Chr1	39396324	39396346	22
Deletion	Chr1	39483186	39483193	7
Deletion	Chr1	41681973	41682624	651	LOC_Os01g71940
Deletion	Chr1	42246060	42246066	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20477927	20477928	2
Insertion	Chr1	2961170	2961175	6
Insertion	Chr9	22800028	22800030	3
Insertion	Chr1	17477876	17477876	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	3981339	3989480	LOC_Os10g07480
Inversion	Chr10	3981358	3989491	LOC_Os10g07480
Inversion	Chr4	14862294	24463633	LOC_Os04g41229
Inversion	Chr4	14862360	24463660	LOC_Os04g41229
Inversion	Chr1	39666772	41662146	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	3571701	Chr1	41682668	LOC_Os01g71940
Translocation	Chr2	3571743	Chr1	41682171	LOC_Os01g71940
Translocation	Chr10	4279690	Chr7	26110011
Translocation	Chr10	4279691	Chr1	41662156	LOC_Os01g71900
Translocation	Chr9	8108907	Chr2	17586907
Translocation	Chr12	13345292	Chr7	7972163
Translocation	Chr5	14705823	Chr2	12182620
Translocation	Chr12	21526074	Chr5	4615618
Translocation	Chr7	26110245	Chr1	41662146	LOC_Os01g71900

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